Miyakogusa Predicted Gene

Lj0g3v0211609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0211609.1 Non Chatacterized Hit- tr|C5XQY9|C5XQY9_SORBI
Putative uncharacterized protein Sb03g027630
OS=Sorghu,60.81,3e-19,RINGv,Zinc finger, RING-CH-type; PREDICTED
PROTEIN,NULL; MEMBRANE ASSOCIATED RING FINGER,NULL; no
de,NODE_51376_length_471_cov_106.885353.path2.1
         (105 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22120.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   193   2e-50
AT2G22120.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   192   4e-50
AT1G50440.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   107   1e-24
AT1G50440.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   107   1e-24
AT1G50440.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   107   1e-24
AT1G11020.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   102   3e-23
AT3G47550.6 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    47   4e-06
AT3G47550.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    47   4e-06
AT3G47550.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    46   4e-06
AT3G47550.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    46   4e-06

>AT2G22120.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr2:9394026-9396979 FORWARD LENGTH=363
          Length = 363

 Score =  193 bits (490), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/106 (85%), Positives = 95/106 (89%), Gaps = 1/106 (0%)

Query: 1   MADHSDSSPLVPPQPLSDAFEIDLEAG-PSEQIQCRICLETDGRDFIAPCKCKGTSKYVH 59
           MAD  + SPLVPP P+ +  EIDLEAG P EQIQCRICLETDGRDFIAPCKCKGTSKYVH
Sbjct: 1   MADELELSPLVPPSPMVEPSEIDLEAGGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVH 60

Query: 60  RDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           RDCLDHWRAIKEGFAFAHCTTCKAPY+LRVH A DRKWRTLKFRFF
Sbjct: 61  RDCLDHWRAIKEGFAFAHCTTCKAPYYLRVHSAGDRKWRTLKFRFF 106


>AT2G22120.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr2:9394026-9396768 FORWARD LENGTH=324
          Length = 324

 Score =  192 bits (487), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 91/106 (85%), Positives = 95/106 (89%), Gaps = 1/106 (0%)

Query: 1   MADHSDSSPLVPPQPLSDAFEIDLEAG-PSEQIQCRICLETDGRDFIAPCKCKGTSKYVH 59
           MAD  + SPLVPP P+ +  EIDLEAG P EQIQCRICLETDGRDFIAPCKCKGTSKYVH
Sbjct: 1   MADELELSPLVPPSPMVEPSEIDLEAGGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVH 60

Query: 60  RDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           RDCLDHWRAIKEGFAFAHCTTCKAPY+LRVH A DRKWRTLKFRFF
Sbjct: 61  RDCLDHWRAIKEGFAFAHCTTCKAPYYLRVHSAGDRKWRTLKFRFF 106


>AT1G50440.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18686099-18687646 FORWARD LENGTH=250
          Length = 250

 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 57/78 (73%)

Query: 28  PSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHL 87
             +Q QCRICL+  G D IAPC CKGT K+VHR CLD+WR+ KEGFAF+HCT C+A + L
Sbjct: 58  SGDQPQCRICLDVGGEDLIAPCNCKGTQKHVHRSCLDNWRSTKEGFAFSHCTECRAFFKL 117

Query: 88  RVHVAADRKWRTLKFRFF 105
           R +V ADR W  L+F+  
Sbjct: 118 RANVPADRWWLRLRFQLL 135


>AT1G50440.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18686099-18687646 FORWARD LENGTH=250
          Length = 250

 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 57/78 (73%)

Query: 28  PSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHL 87
             +Q QCRICL+  G D IAPC CKGT K+VHR CLD+WR+ KEGFAF+HCT C+A + L
Sbjct: 58  SGDQPQCRICLDVGGEDLIAPCNCKGTQKHVHRSCLDNWRSTKEGFAFSHCTECRAFFKL 117

Query: 88  RVHVAADRKWRTLKFRFF 105
           R +V ADR W  L+F+  
Sbjct: 118 RANVPADRWWLRLRFQLL 135


>AT1G50440.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18686099-18687646 FORWARD LENGTH=250
          Length = 250

 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 57/78 (73%)

Query: 28  PSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHL 87
             +Q QCRICL+  G D IAPC CKGT K+VHR CLD+WR+ KEGFAF+HCT C+A + L
Sbjct: 58  SGDQPQCRICLDVGGEDLIAPCNCKGTQKHVHRSCLDNWRSTKEGFAFSHCTECRAFFKL 117

Query: 88  RVHVAADRKWRTLKFRFF 105
           R +V ADR W  L+F+  
Sbjct: 118 RANVPADRWWLRLRFQLL 135


>AT1G11020.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:3676968-3678350 FORWARD LENGTH=321
          Length = 321

 Score =  102 bits (255), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 61/91 (67%), Gaps = 6/91 (6%)

Query: 21  EIDLEAGPSEQIQCRICLETD----GRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFA 76
           E DLE   S    CRICLE D    G + I+PC CKGT ++VHR CLDHWR++KEGFAF+
Sbjct: 50  EEDLENDASSAPCCRICLEDDSELLGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFS 109

Query: 77  HCTTCKAPYHLRVHVAADRK-W-RTLKFRFF 105
           HCTTCKA +HLRV    D   W R  KFR F
Sbjct: 110 HCTTCKAQFHLRVEPFEDNNSWRRKAKFRLF 140


>AT3G47550.6 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:17523841-17525278 FORWARD LENGTH=288
          Length = 288

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 30  EQIQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYH 86
           + ++CRIC E D  ++  APC C G+ KY HR C+  W   K       C  C  PY 
Sbjct: 65  QSVECRICQEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDIT---CEICHQPYQ 119


>AT3G47550.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:17523841-17525278 FORWARD LENGTH=288
          Length = 288

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 30  EQIQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYH 86
           + ++CRIC E D  ++  APC C G+ KY HR C+  W   K       C  C  PY 
Sbjct: 65  QSVECRICQEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDIT---CEICHQPYQ 119


>AT3G47550.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:17523841-17524942 FORWARD LENGTH=232
          Length = 232

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 30  EQIQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYH 86
           + ++CRIC E D  ++  APC C G+ KY HR C+  W   K       C  C  PY 
Sbjct: 65  QSVECRICQEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDIT---CEICHQPYQ 119


>AT3G47550.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:17523841-17525168 FORWARD LENGTH=249
          Length = 249

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 30  EQIQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYH 86
           + ++CRIC E D  ++  APC C G+ KY HR C+  W   K       C  C  PY 
Sbjct: 65  QSVECRICQEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDIT---CEICHQPYQ 119