Miyakogusa Predicted Gene

Lj0g3v0210959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0210959.1 Non Chatacterized Hit- tr|D7T6B1|D7T6B1_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,67.12,3e-17,
,CUFF.13550.1
         (75 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48330.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    80   3e-16
AT3G17580.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    76   5e-15

>AT1G48330.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in
          11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr1:17863897-17864124
          FORWARD LENGTH=75
          Length = 75

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 48/67 (71%), Gaps = 5/67 (7%)

Query: 1  MASNWKKTITTPFKKACTFINQ----QKTRDQKKSQTEQERGVMDLQGEVMACGYEDVQV 56
          MAS WKKTI TPFKKA TF NQ     +  + K  +  ++R V +LQG+VMACGYEDV V
Sbjct: 1  MAS-WKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRTVQELQGDVMACGYEDVLV 59

Query: 57 MWSILDR 63
          MWSILD+
Sbjct: 60 MWSILDK 66


>AT3G17580.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in
          11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr3:6015276-6015518 FORWARD
          LENGTH=80
          Length = 80

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 9/70 (12%)

Query: 3  SNWKKTITTPFKKACTFINQQKTR---------DQKKSQTEQERGVMDLQGEVMACGYED 53
          ++WKKTI TPFKKA TF NQ +           D +  +  ++R V +LQGEVMACGY+D
Sbjct: 2  ASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRMVQELQGEVMACGYDD 61

Query: 54 VQVMWSILDR 63
          V VMWSILD+
Sbjct: 62 VLVMWSILDK 71