Miyakogusa Predicted Gene

Lj0g3v0210949.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0210949.1 Non Chatacterized Hit- tr|I1JKL9|I1JKL9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.43272
PE,83.07,0,SUBFAMILY NOT NAMED,NULL; ATP-DEPENDENT RNA HELICASE,NULL;
DEAD-like helicases superfamily,Helicase,,CUFF.13584.1
         (579 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protei...   619   e-177
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c...   209   3e-54
AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative |...   205   7e-53
AT3G62310.1 | Symbols:  | RNA helicase family protein | chr3:230...   204   1e-52
AT2G47250.1 | Symbols:  | RNA helicase family protein | chr2:193...   202   5e-52
AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei...   197   2e-50
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1...   194   1e-49
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote...   194   2e-49
AT1G27900.1 | Symbols:  | RNA helicase family protein | chr1:971...   190   3e-48
AT1G26370.1 | Symbols:  | RNA helicase family protein | chr1:912...   189   3e-48
AT4G18465.1 | Symbols:  | RNA helicase family protein | chr4:101...   185   8e-47
AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosph...   181   1e-45
AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   124   1e-28
AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   124   2e-28
AT2G35920.1 | Symbols:  | RNA helicase family protein | chr2:150...   121   1e-27
AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   118   1e-26
AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   118   1e-26
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204...   113   5e-25
AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu...   110   4e-24
AT1G58060.1 | Symbols:  | RNA helicase family protein | chr1:214...   108   1e-23
AT1G58050.1 | Symbols:  | RNA helicase family protein | chr1:214...   104   2e-22
AT5G10370.1 | Symbols:  | helicase domain-containing protein / I...   101   1e-21
AT4G01020.1 | Symbols:  | helicase domain-containing protein / I...    97   4e-20
AT2G47680.1 | Symbols:  | zinc finger (CCCH type) helicase famil...    87   3e-17

>AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protein |
           chr1:12099738-12104108 REVERSE LENGTH=1237
          Length = 1237

 Score =  619 bits (1595), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 336/561 (59%), Positives = 394/561 (70%), Gaps = 29/561 (5%)

Query: 1   MMEQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVA 60
           MMEQEIMEAI  H  VII G+TGCGKTTQVPQFLYEAG+GS +    +GIIG+TQPRRVA
Sbjct: 245 MMEQEIMEAINRHPAVIISGQTGCGKTTQVPQFLYEAGFGSKQFSSRSGIIGITQPRRVA 304

Query: 61  VLATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVI 120
           VLATAKRVA+ELG+RLGKEVGFQVRYDKKIGE+ SIKFMTDGILLRE+QND LL RYSVI
Sbjct: 305 VLATAKRVAFELGVRLGKEVGFQVRYDKKIGENSSIKFMTDGILLREIQNDFLLRRYSVI 364

Query: 121 ILDEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSAT 180
           ILDEAHERSLNTDILIGML+R+IK RQ++Y+EQQK + SGGT++ E  + PLKL+LMSAT
Sbjct: 365 ILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQKSLQSGGTVTSECQITPLKLILMSAT 424

Query: 181 LRVQDFTSG-RLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLPPG 239
           LRV+DF SG RLF   PP+IEVPTRQ+PVT++F++KTE  DYIG AYKKV++IHK+LP G
Sbjct: 425 LRVEDFVSGKRLFPNIPPLIEVPTRQYPVTIHFSKKTEIVDYIGEAYKKVMSIHKKLPQG 484

Query: 240 GILVFVTGQREVEDLCRKLRKASKEFVTKKLKGSVINDSTVVPETN--SVEGIDISEINE 297
           GILVFVTGQREV+ LC KLRK+SKE V +  K     D+ V  + +  S  G+D+ EI E
Sbjct: 485 GILVFVTGQREVDYLCEKLRKSSKELVVQAAK----RDAYVKKKCDDGSFGGVDMKEIAE 540

Query: 298 ALEIRGSSSIQQTDRFNGHDEDEDGI-DENESDDFSYXXXXXXXXXXXXXXXXXXHSKNK 356
           A +     S  Q  RF+ H ED   I D N  DDF                         
Sbjct: 541 AFD---DDSNNQNSRFSSHGEDPSDIGDGNYDDDFEEEDMYESDEDRDWETV-------D 590

Query: 357 NNIVDVLGQEGSLASLKAAFENLYGQAPLSSSNGERAISVNTGNELDQPKVVSEKMAKEN 416
           +       +EG L +L+AAF  L  +    S + E A S+   N+  + + V  K     
Sbjct: 591 DGFASSFVEEGKLDALRAAFNALADKN--GSVSAEPAKSIAAENQ--EAEQVKNKF---- 642

Query: 417 CSPSPGPLFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGR 476
              SPG L VLPLYAML  AAQLRVFE V++EERLVVVATNVAETSLTIPGIKYVVDTGR
Sbjct: 643 ---SPGKLRVLPLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVDTGR 699

Query: 477 EKVKKYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAE 536
            KVK YDS  GME+YEV WI                PGHCYRLYSSA F+N F + S  E
Sbjct: 700 VKVKNYDSKTGMESYEVDWISQASASQRAGRAGRTGPGHCYRLYSSAVFSNIFEESSLPE 759

Query: 537 VEKVPVHGVVLLLKSMHIKKV 557
           + KVPV GV+LL+KSM+I KV
Sbjct: 760 IMKVPVDGVILLMKSMNIPKV 780


>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
           chr5:4122747-4128660 FORWARD LENGTH=1255
          Length = 1255

 Score =  209 bits (533), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 161/263 (61%), Gaps = 33/263 (12%)

Query: 5   EIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLAT 64
           E+++ I ++  +++ GETG GKTTQ+ Q+L+E GY        NGI+G TQPRRVA ++ 
Sbjct: 566 ELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGY------TINGIVGCTQPRRVAAMSV 619

Query: 65  AKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIILDE 124
           AKRV+ E+   LG ++G+ +R++   G +  IK+MTDG+LLRE   D  L +Y V+++DE
Sbjct: 620 AKRVSEEMETELGDKIGYAIRFEDVTGPNTVIKYMTDGVLLRETLKDSDLDKYRVVVMDE 679

Query: 125 AHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLRVQ 184
           AHERSLNTD+L G+L +++  R+ F                       KL++ SATL  Q
Sbjct: 680 AHERSLNTDVLFGILKKVVARRRDF-----------------------KLIVTSATLNAQ 716

Query: 185 DFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLPPGGILVF 244
            F++   F    P+  +P R FPV + ++ KT   DY+ AA K+ +TIH   PPG IL+F
Sbjct: 717 KFSN---FFGSVPIFNIPGRTFPVNILYS-KTPCEDYVEAAVKQAMTIHITSPPGDILIF 772

Query: 245 VTGQREVEDLCRKLRKASKEFVT 267
           +TGQ E+E  C  L++  ++ V+
Sbjct: 773 MTGQDEIEAACFSLKERMEQLVS 795



 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 78/134 (58%)

Query: 424 LFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYD 483
           L +LP+Y+ LPA  Q ++F+  ++  R  +VATN+AETSLT+ GI YV+DTG  K+K ++
Sbjct: 804 LLILPIYSQLPADLQAKIFQKPEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVFN 863

Query: 484 SSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVH 543
              GM+  +V  I                PG CYRLY+ +A+ NE       E+++  + 
Sbjct: 864 PRMGMDALQVFPISRAASDQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLG 923

Query: 544 GVVLLLKSMHIKKV 557
            VVLLLKS+ I  +
Sbjct: 924 NVVLLLKSLKIDNL 937


>AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative |
           chr3:9750122-9753719 REVERSE LENGTH=1168
          Length = 1168

 Score =  205 bits (522), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 112/257 (43%), Positives = 161/257 (62%), Gaps = 33/257 (12%)

Query: 2   MEQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAV 61
           +++E+++A+ D+  +++ GETG GKTTQV Q+L EAGY +       G IG TQPRRVA 
Sbjct: 520 LKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT------KGKIGCTQPRRVAA 573

Query: 62  LATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVII 121
           ++ AKRVA E G RLG+EVG+ +R++   G    IK+MTDG+LLRE+  D  LS+YSVI+
Sbjct: 574 MSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIM 633

Query: 122 LDEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATL 181
           LDEAHER+++TD+L G+L +++K R                         L+L++ SATL
Sbjct: 634 LDEAHERTIHTDVLFGLLKKLMKRR-----------------------LDLRLIVTSATL 670

Query: 182 RVQDFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLPPGGI 241
             + F SG  F+    +  +P R FPV + + ++ E TDY+ AA   VL IH   P G I
Sbjct: 671 DAEKF-SGYFFNC--NIFTIPGRTFPVEILYTKQPE-TDYLDAALITVLQIHLTEPEGDI 726

Query: 242 LVFVTGQREVEDLCRKL 258
           LVF+TGQ E++  C+ L
Sbjct: 727 LVFLTGQEEIDSACQSL 743



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 73/131 (55%)

Query: 424 LFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYD 483
           L +LP+Y+ LP+  Q R+F+     +R VVVATN+AE SLTI GI YVVD G  K   Y+
Sbjct: 757 LIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYN 816

Query: 484 SSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVH 543
              G+E+  +  I                PG CYRLY+ +A+ NE P  S  E++++ + 
Sbjct: 817 PKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLG 876

Query: 544 GVVLLLKSMHI 554
              L +K+M I
Sbjct: 877 MTTLTMKAMGI 887


>AT3G62310.1 | Symbols:  | RNA helicase family protein |
           chr3:23057516-23060561 REVERSE LENGTH=726
          Length = 726

 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 162/263 (61%), Gaps = 33/263 (12%)

Query: 1   MMEQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVA 60
           + ++E ++ + ++  +I+ GETG GKTTQ+PQF+ +A    +       ++G TQPRRVA
Sbjct: 65  LQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVGCTQPRRVA 124

Query: 61  VLATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVI 120
            ++ ++RVA E+ + +G+EVG+ +R++        +K++TDG+LLRE   D LL RY VI
Sbjct: 125 AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLERYKVI 184

Query: 121 ILDEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSAT 180
           ILDEAHER+L TD+L G+L  ++K R                         LKLV+MSAT
Sbjct: 185 ILDEAHERTLATDVLFGLLKEVLKNRPD-----------------------LKLVVMSAT 221

Query: 181 L---RVQDFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLP 237
           L   + QD+ SG       P+++VP R  PV +++ ++ E+ DY+ AA + V+ IH   P
Sbjct: 222 LEAEKFQDYFSG------APLMKVPGRLHPVEIFYTQEPER-DYLEAAIRTVVQIHMCEP 274

Query: 238 PGGILVFVTGQREVEDLCRKLRK 260
           PG ILVF+TG+ E+ED CRK+ K
Sbjct: 275 PGDILVFLTGEEEIEDACRKINK 297



 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 8/149 (5%)

Query: 422 GPLFVLPLYAMLPAAAQLRVFEGVKEE-------ERLVVVATNVAETSLTIPGIKYVVDT 474
           GP+ V+PLY+ LP A Q ++F+   E         R +VV+TN+AETSLTI GI YV+D 
Sbjct: 307 GPIKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGIVYVIDP 366

Query: 475 GREKVKKYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSP 534
           G  K K Y+    +E+  V  I                PG C+RLY+  +FNN+    + 
Sbjct: 367 GFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTY 426

Query: 535 AEVEKVPVHGVVLLLKSMHIKKVGYIFSF 563
            E+ +  +   VL LK + I  + + F F
Sbjct: 427 PEILRSNLANTVLTLKKLGIDDLVH-FDF 454


>AT2G47250.1 | Symbols:  | RNA helicase family protein |
           chr2:19399923-19402981 REVERSE LENGTH=729
          Length = 729

 Score =  202 bits (514), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 102/260 (39%), Positives = 159/260 (61%), Gaps = 27/260 (10%)

Query: 1   MMEQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVA 60
           + + + +  +  +  +I+ GETG GKTTQ+PQF+ +A    +       ++G TQPRRVA
Sbjct: 69  LQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPRRVA 128

Query: 61  VLATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVI 120
            ++ ++RVA E+ + +G+EVG+ +R++        +K++TDG+LLRE   D LL RY VI
Sbjct: 129 AMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERYKVI 188

Query: 121 ILDEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSAT 180
           ILDEAHER+L TD+L G+L  +++ R                  P+     LKLV+MSAT
Sbjct: 189 ILDEAHERTLATDVLFGLLKEVLRNR------------------PD-----LKLVVMSAT 225

Query: 181 LRVQDFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLPPGG 240
           L  + F     + +  P+++VP R  PV +++ ++ E+ DY+ AA + V+ IH   PPG 
Sbjct: 226 LEAEKFQE---YFSGAPLMKVPGRLHPVEIFYTQEPER-DYLEAAIRTVVQIHMCEPPGD 281

Query: 241 ILVFVTGQREVEDLCRKLRK 260
           ILVF+TG+ E+ED CRK+ K
Sbjct: 282 ILVFLTGEEEIEDACRKINK 301



 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)

Query: 422 GPLFVLPLYAMLPAAAQLRVFEGVK-------EEERLVVVATNVAETSLTIPGIKYVVDT 474
           GP+ V+PLY+ LP A Q ++F+             R +VV+TN+AETSLTI GI YV+D 
Sbjct: 311 GPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 370

Query: 475 GREKVKKYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSP 534
           G  K K Y+    +E+  V  I                PG C+RLY+  +FNN+    + 
Sbjct: 371 GFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTY 430

Query: 535 AEVEKVPVHGVVLLLKSMHIKKVGYIFSF 563
            E+ +  +   VL LK + I  + + F F
Sbjct: 431 PEILRSNLANTVLTLKKLGIDDLVH-FDF 458


>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
           chr2:14872728-14879615 FORWARD LENGTH=1044
          Length = 1044

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/264 (41%), Positives = 154/264 (58%), Gaps = 33/264 (12%)

Query: 5   EIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLAT 64
           +++ A+ DH  +II GETG GKTTQ+PQ+L+EAGY         G +G TQPRRVA ++ 
Sbjct: 412 QLLNAVKDHQVLIIVGETGSGKTTQIPQYLHEAGY------TKLGKVGCTQPRRVAAMSV 465

Query: 65  AKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIILDE 124
           A RVA E+G +LG EVG+ +R++    E   +K+MTDG+LLREL  +  L  YSVII+DE
Sbjct: 466 AARVAQEMGGKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLRELLGEPDLGSYSVIIVDE 525

Query: 125 AHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLRVQ 184
           AHER+L TDIL G++  I + R                  P+     LKL++ SAT+  +
Sbjct: 526 AHERTLRTDILFGLVKDIARAR------------------PD-----LKLLISSATMDAE 562

Query: 185 DFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLPPGGILVF 244
            F+    F    P+   P R++PV + F    E  DY+ AA   VLTIH + P G +LVF
Sbjct: 563 KFSD---FFDQAPIFRFPGRRYPVDICFTTAPE-ADYMDAAITTVLTIHVKEPLGDVLVF 618

Query: 245 VTGQREVEDLCRKLRKASKEFVTK 268
           + GQ E+E +   L+   +   TK
Sbjct: 619 LPGQEEIEAVEENLKHKIRGLGTK 642



 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 76/131 (58%)

Query: 424 LFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYD 483
           L + P+YA LP+  Q ++FE   E  R VV+ATN+AETSLTI GIKYVVD G  K+K Y+
Sbjct: 646 LIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYN 705

Query: 484 SSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVH 543
              GME+  V  I                PG CYRLY++  + N+  D +  E+++  + 
Sbjct: 706 PRTGMESLLVTPISKASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLA 765

Query: 544 GVVLLLKSMHI 554
            VVL LKS+ I
Sbjct: 766 SVVLSLKSLGI 776


>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
           chr1:11742356-11749286 REVERSE LENGTH=1034
          Length = 1034

 Score =  194 bits (493), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/248 (41%), Positives = 152/248 (61%), Gaps = 33/248 (13%)

Query: 5   EIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLAT 64
           ++++A+ +H  ++I G+TG GKTTQ+PQ+L+EAGY         G +G TQPRRVA ++ 
Sbjct: 402 QLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGY------TKRGKVGCTQPRRVAAMSV 455

Query: 65  AKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIILDE 124
           A RVA E+G++LG EVG+ +R++    +   +K+MTDG+LLREL  +  L+ YSV+I+DE
Sbjct: 456 AARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLASYSVVIVDE 515

Query: 125 AHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLRVQ 184
           AHER+L+TDIL G++  I + R                  P+     LKL++ SAT+  +
Sbjct: 516 AHERTLSTDILFGLVKDIARFR------------------PD-----LKLLISSATMDAE 552

Query: 185 DFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLPPGGILVF 244
            F+    +    P+   P R++PV + +    E  DY+ AA   +LTIH R P G ILVF
Sbjct: 553 KFSD---YFDTAPIFSFPGRRYPVEINYTSAPE-ADYMDAAIVTILTIHVREPLGDILVF 608

Query: 245 VTGQREVE 252
            TGQ E+E
Sbjct: 609 FTGQEEIE 616



 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 77/131 (58%)

Query: 424 LFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYD 483
           L + P+YA LP+  Q ++FE   E  R VV+ATN+AETSLTI GIKYVVD G  K+K Y+
Sbjct: 636 LIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYN 695

Query: 484 SSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVH 543
              GME+  +  I                PG CYRLY++  +NN+  + +  EV++  + 
Sbjct: 696 PRTGMESLLITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLA 755

Query: 544 GVVLLLKSMHI 554
            VVL LKS+ I
Sbjct: 756 SVVLALKSLGI 766


>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein
           | chr1:11742356-11749286 REVERSE LENGTH=1044
          Length = 1044

 Score =  194 bits (493), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/248 (41%), Positives = 152/248 (61%), Gaps = 33/248 (13%)

Query: 5   EIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLAT 64
           ++++A+ +H  ++I G+TG GKTTQ+PQ+L+EAGY         G +G TQPRRVA ++ 
Sbjct: 412 QLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGY------TKRGKVGCTQPRRVAAMSV 465

Query: 65  AKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIILDE 124
           A RVA E+G++LG EVG+ +R++    +   +K+MTDG+LLREL  +  L+ YSV+I+DE
Sbjct: 466 AARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLASYSVVIVDE 525

Query: 125 AHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLRVQ 184
           AHER+L+TDIL G++  I + R                  P+     LKL++ SAT+  +
Sbjct: 526 AHERTLSTDILFGLVKDIARFR------------------PD-----LKLLISSATMDAE 562

Query: 185 DFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLPPGGILVF 244
            F+    +    P+   P R++PV + +    E  DY+ AA   +LTIH R P G ILVF
Sbjct: 563 KFSD---YFDTAPIFSFPGRRYPVEINYTSAPE-ADYMDAAIVTILTIHVREPLGDILVF 618

Query: 245 VTGQREVE 252
            TGQ E+E
Sbjct: 619 FTGQEEIE 626



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 77/131 (58%)

Query: 424 LFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYD 483
           L + P+YA LP+  Q ++FE   E  R VV+ATN+AETSLTI GIKYVVD G  K+K Y+
Sbjct: 646 LIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYN 705

Query: 484 SSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVH 543
              GME+  +  I                PG CYRLY++  +NN+  + +  EV++  + 
Sbjct: 706 PRTGMESLLITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLA 765

Query: 544 GVVLLLKSMHI 554
            VVL LKS+ I
Sbjct: 766 SVVLALKSLGI 776


>AT1G27900.1 | Symbols:  | RNA helicase family protein |
           chr1:9715615-9720346 REVERSE LENGTH=700
          Length = 700

 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/273 (38%), Positives = 163/273 (59%), Gaps = 32/273 (11%)

Query: 3   EQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVL 62
           E++I+E +  +S V+I GETG GK+TQ+ Q L+  GY  S      G+I +TQPRRVA +
Sbjct: 10  EEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYTKS------GVIAITQPRRVAAV 63

Query: 63  ATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIIL 122
           + A+RVA EL + LG++VG+ +R++ +      IK++TDG+LLRE  ++ +L  YSVIIL
Sbjct: 64  SVARRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRESLSNPMLDDYSVIIL 123

Query: 123 DEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLR 182
           DEAHERSLNTDIL+G++ R+++ R   +    KV+++  T+  EK               
Sbjct: 124 DEAHERSLNTDILLGLVKRLVRIRASNF----KVLITSATLDGEK--------------- 164

Query: 183 VQDFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLPPGGIL 242
           V +F SG       PV+ VP + +PV + ++ K     YI ++ K  + IH R P G IL
Sbjct: 165 VSEFFSG------CPVLNVPGKLYPVEILYS-KERPVSYIESSLKVAIDIHVREPEGDIL 217

Query: 243 VFVTGQREVEDLCRKLRKASKEFVTKKLKGSVI 275
           +F+TGQ ++E L  +L +  +         ++I
Sbjct: 218 IFMTGQDDIEKLVSRLEEKVRSLAEGSCMDAII 250



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 1/140 (0%)

Query: 425 FVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDS 484
            + PL+  LP   Q+RVF       R  +V+TN+AETSLT+ G+ YV+D+G  K ++Y+ 
Sbjct: 249 IIYPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNP 308

Query: 485 SNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHG 544
           S+GM + +V  I                PG CYRLY  A + ++F D +  E+++  + G
Sbjct: 309 SSGMFSLDVIQISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAG 368

Query: 545 VVLLLKSMHIKKVGYI-FSF 563
            VL LKS+ +  +  + F F
Sbjct: 369 SVLYLKSLDLPDIDILKFDF 388


>AT1G26370.1 | Symbols:  | RNA helicase family protein |
           chr1:9122030-9125368 REVERSE LENGTH=717
          Length = 717

 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/276 (39%), Positives = 161/276 (58%), Gaps = 33/276 (11%)

Query: 2   MEQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAV 61
           +E+ ++E +  +  +II GETG GKTTQ+PQFLY AG+          +IG+TQPRR+A 
Sbjct: 46  VEKRLVEEVQKNDILIIVGETGSGKTTQLPQFLYNAGFCR-----EGKMIGITQPRRIAA 100

Query: 62  LATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVII 121
           +  AKRVA E  ++LG++VG+ +R+D     S  +K+MTDG+LLRE   D  LSRYSVII
Sbjct: 101 VTVAKRVAEECEVQLGQKVGYSIRFDDTTSGSTRLKYMTDGLLLREALLDPHLSRYSVII 160

Query: 122 LDEAHERSLNTDILIGMLSRIIKTRQKFYDE---------------------QQKVILSG 160
           +DEAH+RS++TD+L+ +L +I +TR +   E                     QQ  +L G
Sbjct: 161 VDEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQVQTTTRDANGPQQNGVLKG 220

Query: 161 GTISPEKMVFPLKLVLMSATLRVQDFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTD 220
                 + + PLKL++MSA+L  + F+    +      + V  RQFPV + +    E +D
Sbjct: 221 YQ---GRKLSPLKLIIMSASLDARVFSE---YFGGAKAVHVQGRQFPVDILYTVHPE-SD 273

Query: 221 YIGAAYKKVLTIHKRLPPGGILVFVTGQREVEDLCR 256
           Y+ A    +  IH    PG ILVF+TGQ E+E + R
Sbjct: 274 YVDATLVTIFQIHFEEKPGDILVFLTGQDEIESVER 309



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 406 KVVSEKMAKENCSPSPGPLFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTI 465
           ++V E++  +N       L  L +++ LP+  Q++VF       R V++ATN+AETS+TI
Sbjct: 309 RLVQERL--QNIPEDKRKLLPLAIFSALPSEQQMKVFAPAPTGFRKVILATNIAETSITI 366

Query: 466 PGIKYVVDTGREKVKKYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAF 525
           PGI+YV+D G  K + YD S GME+ +V                   PG  +RLY    F
Sbjct: 367 PGIRYVIDPGFVKARSYDPSKGMESLDVVPASKAQTLQRSGRAGREGPGKSFRLYPEREF 426

Query: 526 NNEFPDYSPAEVEKVPVHGVVLLLKSMHIKK-VGYIF 561
             +  D +  E+++  +  ++L LK++ I   VG+ F
Sbjct: 427 -EKLEDSTKPEIKRCNLSNIILQLKALGIDDIVGFDF 462


>AT4G18465.1 | Symbols:  | RNA helicase family protein |
           chr4:10197056-10201611 FORWARD LENGTH=695
          Length = 695

 Score =  185 bits (469), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/269 (39%), Positives = 158/269 (58%), Gaps = 44/269 (16%)

Query: 5   EIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLAT 64
           EI+  + +H+  II GETG GKTTQ+PQ+L EAG+          +I  TQPRR+AV A 
Sbjct: 56  EILYLVENHATTIIVGETGSGKTTQIPQYLKEAGWAEG-----GRVIACTQPRRLAVQAV 110

Query: 65  AKRVAYELGLRLGKEVGFQVRY-DKKIGESCSIKFMTDGILLRELQNDILLSRYSVIILD 123
           + RVA E+G+ LG+EVG+ +R+ D       S+KF+TDG+L+RE+  D LL++YSVI++D
Sbjct: 111 SARVAEEMGVNLGEEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMMEDPLLTKYSVIMID 170

Query: 124 EAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLRV 183
           EAHERS++TDIL+G+L +I + R                  PE     L+L++ SAT+  
Sbjct: 171 EAHERSISTDILLGLLKKIQRRR------------------PE-----LRLIISSATIEA 207

Query: 184 QD----FTSGRLFHTP----------PPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKV 229
           +     F S +  H P          P ++ V  R F V +++  +   +DYI +    +
Sbjct: 208 KTMSNFFNSSKKRHAPEGSTPGPKLEPAILSVEGRGFSVKIHYVEEP-VSDYIRSVVSTI 266

Query: 230 LTIHKRLPPGGILVFVTGQREVEDLCRKL 258
           L I++R PPG +LVF+TGQ ++E   + L
Sbjct: 267 LLINEREPPGDVLVFLTGQEDIETAIKLL 295



 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 1/148 (0%)

Query: 410 EKMAKENCSPSPGPLFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIK 469
           E+ A  N   S G L  LPLY+ L  + Q  +F      +R V+++TN+AETSLT+ G+ 
Sbjct: 296 EEEAHSNQKNSSG-LLPLPLYSGLSRSEQELIFTPTPRGKRKVILSTNIAETSLTLEGVV 354

Query: 470 YVVDTGREKVKKYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEF 529
           YV+D+G  K K Y+  + +E+  V  I                PG CYRLY+   F N+ 
Sbjct: 355 YVIDSGFSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLNQM 414

Query: 530 PDYSPAEVEKVPVHGVVLLLKSMHIKKV 557
           P     E+++  +   V+ LK++ I  +
Sbjct: 415 PGEGIPEMQRSNLVSTVIQLKALGIDNI 442


>AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:9388613-9390774
           REVERSE LENGTH=656
          Length = 656

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 155/265 (58%), Gaps = 33/265 (12%)

Query: 4   QEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLA 63
           +E+++ I ++  ++I GETG GKTTQ+PQ+L EAGY         G IG TQPRRVA ++
Sbjct: 222 EELLKLIEENQVLVIVGETGSGKTTQIPQYLQEAGY------TKRGKIGCTQPRRVAAMS 275

Query: 64  TAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIILD 123
            A RVA E+G++LG EVG+ +R++    E   IK+MTDG+LLREL  +  L  YSVII+D
Sbjct: 276 VASRVAQEVGVKLGHEVGYSIRFEDCTSEKTVIKYMTDGMLLRELLIEPKLDSYSVIIID 335

Query: 124 EAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLRV 183
           EAHER+L+TDIL  ++  + K R                  P+     L+L++ SATL  
Sbjct: 336 EAHERTLSTDILFALVKDVAKVR------------------PD-----LRLIISSATLEA 372

Query: 184 QDFTSGRLFHTPPPVIEVPTRQFPVTVYFARKTEKTDYIGAAYKKVLTIHKRLPPGGILV 243
           + F+    +     +  +P R++PV   F RK  + DY+    + V+ IH+    G ILV
Sbjct: 373 KKFSE---YFDSARIYLIPGRRYPVEKLF-RKCPEPDYLETVIRTVVQIHQTEAIGDILV 428

Query: 244 FVTGQREVEDLCRKLRKASKEFVTK 268
           F+TGQ E+E +   L++   +  TK
Sbjct: 429 FLTGQEEIETVETNLKRRMMDLGTK 453



 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 5/140 (3%)

Query: 424 LFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYD 483
           + + P+Y+ LP   Q +VFE   +  R VV+ATN+AETSLTI G+KYV+D G  K+  Y+
Sbjct: 457 IIICPIYSNLPTPLQAKVFEPAPKGTRKVVLATNIAETSLTIDGVKYVIDPGYCKINSYN 516

Query: 484 SSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVH 543
              GME+  V  I                PG C+RLY+        P   P E+++  + 
Sbjct: 517 PRTGMESLLVTPISKASAAQRAGRSGRTGPGKCFRLYNIKDLE---PTTIP-EIQRANLA 572

Query: 544 GVVLLLKSMHIKKVGYIFSF 563
            VVL LKS+ I+ V + F F
Sbjct: 573 SVVLTLKSLGIQDV-FNFDF 591


>AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr5:1428796-1434516 FORWARD LENGTH=1161
          Length = 1161

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 29/228 (12%)

Query: 3   EQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVL 62
           ++ +++AI  +  +++ GETGCGKTTQ+PQ++ E+   S +    N I   TQPRR++ +
Sbjct: 266 KERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCNII--CTQPRRISAM 323

Query: 63  ATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIIL 122
           A ++RV+ E G  LG+ VGF+VR +   G++  + F T GILLR L +D  L+  + + +
Sbjct: 324 AVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLLFCTSGILLRRLLSDRNLNGVTHVFV 383

Query: 123 DEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLR 182
           DE HER +N D LI +L  ++  R                  P+     L+LVLMSATL 
Sbjct: 384 DEIHERGMNEDFLIIVLKELLPRR------------------PD-----LRLVLMSATLN 420

Query: 183 VQDFTSGRLFHTPPPVIEVPTRQFPVTVYFARKT-EKTDYIGAAYKKV 229
            + F++   ++   P I +P    PV  +F     E T Y   ++ +V
Sbjct: 421 AELFSN---YYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQV 465



 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 403 DQPKVVSEKMAKENCSPSPGPLFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETS 462
           D  + +S+++        P  + +L  +  +  A Q  +FE      R +V+ATN+AE S
Sbjct: 550 DDIRSLSDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVLATNMAEAS 609

Query: 463 LTIPGIKYVVDTGREKVKKYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSS 522
           +TI  + +VVD G+ K   YD+ N        WI                PG CY LY  
Sbjct: 610 ITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLFPGECYHLYPK 669

Query: 523 AAFNNEFPDYSPAEVEKVPVHGVVLLLKSMHIKKVGYIFSFYL 565
             + + F +Y   E+ + P++ + L +KS+ ++ +    S  L
Sbjct: 670 CVY-DAFAEYQLPELLRTPLNSLCLQIKSLQVESIAEFLSAAL 711


>AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr2:88847-94635 REVERSE LENGTH=1113
          Length = 1113

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 29/225 (12%)

Query: 6   IMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLATA 65
           ++ AI+ +  ++I GETGCGKTTQ+PQF+ E+   +++    + I   TQPRR++ ++ +
Sbjct: 229 VLTAISQNQVIVISGETGCGKTTQIPQFILESEIEANRGAFSSII--CTQPRRISAMSVS 286

Query: 66  KRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIILDEA 125
           +RVAYE G +LG+ VG++VR +   G    + F T GILLR L  D  L   + +I+DE 
Sbjct: 287 ERVAYERGEQLGESVGYKVRLEGVKGRDTRLLFCTTGILLRRLLVDRNLRGVTHVIVDEI 346

Query: 126 HERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLRVQD 185
           HER +N D L+ +L  ++  R +                       LKL+LMSATL  + 
Sbjct: 347 HERGMNEDFLLIILKDLLSRRSE-----------------------LKLILMSATLDAEL 383

Query: 186 FTSGRLFHTPPPVIEVPTRQFPVTVYFARKT-EKTDYIGAAYKKV 229
           F+S   +     VI +P   +PV  +F     E T Y    Y ++
Sbjct: 384 FSS---YFGGAGVIYIPGFTYPVRSHFLEDILEMTRYRLTPYNQI 425



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 420 SPGPLFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKV 479
           +P  + +L  +  +    Q  +FE      R +V+ATN+AETS+TI  + +V+D G+ K 
Sbjct: 526 NPDLVMLLACHGSMETFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVIDCGKAKE 585

Query: 480 KKYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEK 539
             YD+ N        WI                PG CY LY    + + F +Y   E+ +
Sbjct: 586 TSYDALNNTPCLLPSWISKVSAQQRRGRAGRVRPGQCYHLYPKCVY-DAFAEYQLPEILR 644

Query: 540 VPVHGVVLLLKSMHIKKVGYIFS 562
            P+H + L +KS+++  +    S
Sbjct: 645 TPLHSLCLQIKSLNLGSISEFLS 667


>AT2G35920.1 | Symbols:  | RNA helicase family protein |
           chr2:15075674-15080506 FORWARD LENGTH=995
          Length = 995

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 29/221 (13%)

Query: 2   MEQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAV 61
           M++E + +++ +  +++ GETGCGKTTQ+PQF+ E    S +    N I   TQPRR++ 
Sbjct: 233 MKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNII--CTQPRRISA 290

Query: 62  LATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVII 121
           ++ A R++ E G  +G+ VG+Q+R + K  +   + F T G+LLR L  D  L+  S ++
Sbjct: 291 ISVASRISAERGESIGESVGYQIRLESKRSDQTRLLFCTTGVLLRRLIEDPNLTNVSHLL 350

Query: 122 LDEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATL 181
           +DE HER +N D L+ +L  ++  R                  P+     L+L+LMSAT+
Sbjct: 351 VDEIHERGMNEDFLLIILRDLLPRR------------------PD-----LRLILMSATI 387

Query: 182 RVQDFTSGRLFHTPPPVIEVPTRQFPVTVYFARKT-EKTDY 221
               F++   +    P + +P   FPV   F     EK+ Y
Sbjct: 388 NADMFST---YFGNSPTMHIPGFTFPVAELFLEDVLEKSRY 425



 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 403 DQPKVVSEKMAKENCSPSPGPLFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETS 462
           D+   + EK+   N         VLPL+  +P   Q  +F+     +R +V+ATN+AE+S
Sbjct: 514 DEISKLLEKINMNNFLGDSSKFLVLPLHGSMPTVNQREIFDRPPPNKRKIVLATNIAESS 573

Query: 463 LTIPGIKYVVDTGREKVKKYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSS 522
           +TI  + YVVD G+ K   YD+ N +      WI                 G CYRLY  
Sbjct: 574 ITIDDVVYVVDCGKAKETSYDALNKVACLLPSWISKASAHQRRGRAGRVQAGVCYRLYPK 633

Query: 523 AAFNNEFPDYSPAEVEKVPVHGVVLLLKSMHIKKVGYIFS 562
             + + FP Y   E+ + P+  + L +KS+ +  +G   +
Sbjct: 634 VIY-DAFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLA 672


>AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989670-17995169 REVERSE LENGTH=1197
          Length = 1197

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 28/207 (13%)

Query: 6   IMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLATA 65
           +++AI  +  V++ GETGCGKTTQ+PQ++ E+   +++    + I   TQPRR++ ++ +
Sbjct: 308 LLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSII--CTQPRRISAISVS 365

Query: 66  KRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIILDEA 125
           +RVA E G ++G+ VG++VR +   G    + F T G+LLR L  D  L   + +++DE 
Sbjct: 366 ERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVVVDEI 425

Query: 126 HERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLRVQD 185
           HER +N D L+ +L  ++  R                  P+     LKL+LMSATL  + 
Sbjct: 426 HERGMNEDFLLIVLKDLLPRR------------------PD-----LKLILMSATLNAEL 462

Query: 186 FTSGRLFHTPPPVIEVPTRQFPVTVYF 212
           F+S   +    P + +P   +PV  +F
Sbjct: 463 FSS---YFGGAPAMHIPGFTYPVRAHF 486



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 421 PGPLFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVK 480
           P  + +L  +  + ++ Q  +F+   E  R +V+ATN+AETS+TI  + YV+D G+ K  
Sbjct: 607 PNKVLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKET 666

Query: 481 KYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKV 540
            YD+ N        WI                PG CY LY    +   F DY   E+ + 
Sbjct: 667 SYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVY-EAFADYQQPELLRT 725

Query: 541 PVHGVVLLLKSMHIKKVGYIFS 562
           P+  + L +KS+ +  +    S
Sbjct: 726 PLQSLCLQIKSLGLGSISEFLS 747


>AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989517-17995169 REVERSE LENGTH=1206
          Length = 1206

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 28/207 (13%)

Query: 6   IMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLATA 65
           +++AI  +  V++ GETGCGKTTQ+PQ++ E+   +++    + I   TQPRR++ ++ +
Sbjct: 308 LLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSII--CTQPRRISAISVS 365

Query: 66  KRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIILDEA 125
           +RVA E G ++G+ VG++VR +   G    + F T G+LLR L  D  L   + +++DE 
Sbjct: 366 ERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVVVDEI 425

Query: 126 HERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLRVQD 185
           HER +N D L+ +L  ++  R                  P+     LKL+LMSATL  + 
Sbjct: 426 HERGMNEDFLLIVLKDLLPRR------------------PD-----LKLILMSATLNAEL 462

Query: 186 FTSGRLFHTPPPVIEVPTRQFPVTVYF 212
           F+S   +    P + +P   +PV  +F
Sbjct: 463 FSS---YFGGAPAMHIPGFTYPVRAHF 486



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 421 PGPLFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVK 480
           P  + +L  +  + ++ Q  +F+   E  R +V+ATN+AETS+TI  + YV+D G+ K  
Sbjct: 607 PNKVLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKET 666

Query: 481 KYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKV 540
            YD+ N        WI                PG CY LY    +   F DY   E+ + 
Sbjct: 667 SYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVY-EAFADYQQPELLRT 725

Query: 541 PVHGVVLLLKSMHIKKVGYIFS 562
           P+  + L +KS+ +  +    S
Sbjct: 726 PLQSLCLQIKSLGLGSISEFLS 747


>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
           chr1:2040567-2047333 FORWARD LENGTH=1576
          Length = 1576

 Score =  113 bits (282), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 32/210 (15%)

Query: 6   IMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLATA 65
           I+ A+  +  V+I GETGCGKTTQVPQ+L +  + S K       I  TQPRR++ ++ +
Sbjct: 226 IISAVESNQVVLIAGETGCGKTTQVPQYLLDHMWHSKKEACK---IICTQPRRISAISVS 282

Query: 66  KRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRY---SVIIL 122
            R+++E G  +G+ VG++VR   + G   S+ F T+GILLR L    + S     + II+
Sbjct: 283 DRISWERGETIGRTVGYKVRLQSEGGRESSVVFCTNGILLRVLIGKGVNSSVPDITHIIV 342

Query: 123 DEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLR 182
           DE HER   +D ++ +L  ++ +                          L+L+LMSATL 
Sbjct: 343 DEIHERDSYSDFMLMILRDLLPSNPH-----------------------LRLILMSATLD 379

Query: 183 VQDFTSGRLFHTPPPVIEVPTRQFPVTVYF 212
            + F+    +    PV+ VP   +PV  +F
Sbjct: 380 AERFSE---YFGGCPVVRVPGFTYPVRTFF 406



 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 5/131 (3%)

Query: 424 LFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYD 483
             +L L++ +PA  Q +VF       R +V+ATN+AE+++TI  + YV+D+GR K K YD
Sbjct: 607 FIILCLHSRVPAEEQKKVFNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYD 666

Query: 484 SSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSS--AAFNNEFPDYSPAEVEKVP 541
             N + T +  W+                 G CY LYS   AA     P+Y   EV ++P
Sbjct: 667 PYNDVSTLQSSWVSKANAKQRAGRAGRCQAGICYHLYSKLRAA---SLPEYRVPEVMRMP 723

Query: 542 VHGVVLLLKSM 552
           V  + L +K +
Sbjct: 724 VDELCLQVKML 734


>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
           and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
          Length = 1299

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 33/211 (15%)

Query: 6   IMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLATA 65
           I  A+  +  ++I GETGCGKTTQVPQ+L +  + S +       I  TQPRR++ ++ +
Sbjct: 196 ITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCK---IVCTQPRRISAMSVS 252

Query: 66  KRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVI---IL 122
           +R++ E G  +G+ +G++VR   K G   S+ F T+GILLR L     +S  S I   I+
Sbjct: 253 ERISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKGSVSSVSDITHIIV 312

Query: 123 DEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLR 182
           DE HER   +D ++ ++  ++ +                          L+L+LMSATL 
Sbjct: 313 DEIHERDCYSDFMLAIIRDLLPSNPH-----------------------LRLILMSATLD 349

Query: 183 VQDFTSGRLFHTPPPVIEVPTRQFPV-TVYF 212
            + F+    +    PV+ VP   +PV T+Y 
Sbjct: 350 AERFSG---YFGGCPVVRVPGFTYPVRTLYL 377



 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 426 VLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSS 485
           ++ L++M+PA  Q +VF       R +V+ATN+AE+++TI  + YV+D+GR K K YD  
Sbjct: 585 IICLHSMVPAGEQKKVFNRPPPGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPY 644

Query: 486 NGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGV 545
           N + T +  W+                PG CY LYS     +  PD+   E++++PV  +
Sbjct: 645 NNVSTLQSSWVSKANAKQRQGRAGRCQPGICYHLYSRLRAAS-MPDFKVPEIKRMPVEEL 703

Query: 546 VLLLK 550
            L +K
Sbjct: 704 CLQVK 708


>AT1G58060.1 | Symbols:  | RNA helicase family protein |
           chr1:21489480-21501775 REVERSE LENGTH=1459
          Length = 1459

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 112/215 (52%), Gaps = 34/215 (15%)

Query: 6   IMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGV--TQPRRVAVLA 63
           I++ + +   +++CGETG GKTTQVPQF+ +    S     H G   +  TQPRR+A ++
Sbjct: 623 ILQHLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSG----HGGYCNIICTQPRRIAAIS 678

Query: 64  TAKRVAYEL-----GLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYS 118
            A+RVA E      GL     VG+QVR +    +   + F T GILLR+L  D  L+  +
Sbjct: 679 VAQRVADERCESSPGLD-DSLVGYQVRLESARSDKTRLLFCTTGILLRKLAGDRTLNDVT 737

Query: 119 VIILDEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMS 178
            II+DE HERSL  D L+ +L  +I+ +                 S +     LK++LMS
Sbjct: 738 HIIVDEVHERSLLGDFLLIILKSLIEKQ-----------------SCDNTSRKLKVILMS 780

Query: 179 ATLRVQDFTSGRLF-HTPPPVIEVPTRQFPVTVYF 212
           AT+    F+  R F H   PVI    R  PVT +F
Sbjct: 781 ATVDADLFS--RYFGHC--PVITAQGRTHPVTTHF 811



 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 3/138 (2%)

Query: 421  PGPLFVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVK 480
            P   ++LPL++ + ++ Q +VF    +  R V+ ATN+AETS+TI  + YV+D+G+ K  
Sbjct: 944  PAADWLLPLHSSIASSEQRKVFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKEN 1003

Query: 481  KYDSSNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKV 540
            +Y+    + +    WI                PG C+ LY+   F      Y   E+ ++
Sbjct: 1004 RYNPQKKLSSMVEDWISQANARQRTGRAGRVKPGICFSLYTRYRFEKLMRPYQVPEMLRM 1063

Query: 541  PVHGVVLLLKSM---HIK 555
            P+  + L +K +   HIK
Sbjct: 1064 PLVELCLQIKLLGLGHIK 1081


>AT1G58050.1 | Symbols:  | RNA helicase family protein |
           chr1:21478590-21487839 REVERSE LENGTH=1417
          Length = 1417

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 36/232 (15%)

Query: 2   MEQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGV--TQPRRV 59
           ++++I++ + +   +++CGETG GKTTQVPQF+ +    S     H G   +  TQPR +
Sbjct: 602 VKKDILQKLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSG----HGGYCNIICTQPRAI 657

Query: 60  AVLATAKRVAYEL-----GLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILL 114
            V   A+RVA E      G      V +QVR+     +   + F T GILLR+L  D  L
Sbjct: 658 TV---AQRVADERCEPPPGFD-NSVVAYQVRHQNARSDKTRLLFCTTGILLRKLVGDTTL 713

Query: 115 SRYSVIILDEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKL 174
              + II+DE HERSL  D L+ +L  +I+ +                 S +  +  LK+
Sbjct: 714 KDVTHIIVDEVHERSLMGDFLLIILKSLIEKQ-----------------SWDNALPKLKV 756

Query: 175 VLMSATLRVQDFTSGRLFHTPPPVIEVPTRQFPVTVYFARKT-EKTDYIGAA 225
           +LMSAT+    F+    +    P+I    R  PVT YF     E+T Y+ A+
Sbjct: 757 ILMSATVDAHQFSR---YFGQCPIITAQGRTHPVTTYFLEDIYERTKYLLAS 805



 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 425  FVLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDS 484
            ++LPL++ + +  Q +VF    +  R V++ATN+AETS+TI  + YV+D+G+ K  +Y+ 
Sbjct: 915  WLLPLHSSIASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNP 974

Query: 485  SNGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHG 544
               + +    W+                PGHC+ LY+   F      Y   E+ +VP+  
Sbjct: 975  HKKLSSMVEDWVSKANARQRMGRAGRVKPGHCFSLYTRHRFEKLMRPYQVPEMLRVPLVE 1034

Query: 545  VVLLLKSMHIKKVG 558
            + L     HIK +G
Sbjct: 1035 LCL-----HIKLLG 1043


>AT5G10370.1 | Symbols:  | helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           | chr5:3261245-3267188 FORWARD LENGTH=1775
          Length = 1775

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 125/264 (47%), Gaps = 41/264 (15%)

Query: 4   QEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLA 63
           ++I++ I     +++ GETG GK+TQ+ QFL ++G  +S+S      I  TQPR++A + 
Sbjct: 313 RQILKKIHREQIMVLIGETGSGKSTQLVQFLADSGVAASES------IVCTQPRKIAAMT 366

Query: 64  TAKRVAYEL-GLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIIL 122
            A RV  E  G      V     +      S  + +MTD  LL+    D  LS  S +I+
Sbjct: 367 LADRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCVII 426

Query: 123 DEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLR 182
           DEAHERSLNTD+L+ +L +++  R                         L+LV+MSAT  
Sbjct: 427 DEAHERSLNTDLLLALLKKLLSRR-----------------------IDLRLVIMSATAD 463

Query: 183 VQDFTSGRLFHTPPPVIEVPTRQFPV-TVYFARKTEK-------TDYIGAAYKKVLTIHK 234
            +  +    +     ++ V  R FPV  VY    TE+         Y+G   K  + IHK
Sbjct: 464 AKQLSQ---YFFSCGILLVNGRNFPVEIVYSPSDTEENSVVGGIASYVGDVVKMAVEIHK 520

Query: 235 RLPPGGILVFVTGQREVEDLCRKL 258
               G IL F+T Q EVE  C + 
Sbjct: 521 TEKEGTILAFLTSQAEVEWACERF 544



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 426 VLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSS 485
            LPL+  L    Q RVF+      R V+ ATN+AETSLTIPG+KYV+D+G  K  KY+  
Sbjct: 551 ALPLHGKLSFEEQFRVFQN-HPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPR 609

Query: 486 NGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGV 545
            GM   +V  +                PG CYRLYS   F++   +  P E+ +V + GV
Sbjct: 610 TGMSILKVCRVSQSSARQRAGRAGRTEPGRCYRLYSKNDFDSMNLNQEP-EIRRVHL-GV 667

Query: 546 VLL 548
            LL
Sbjct: 668 ALL 670


>AT4G01020.1 | Symbols:  | helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           | chr4:439086-445043 FORWARD LENGTH=1787
          Length = 1787

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 121/264 (45%), Gaps = 41/264 (15%)

Query: 4   QEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAVLA 63
           ++I++ I     +++ GETG GK+TQ+ QFL ++G  +S+S      I  TQPR++A + 
Sbjct: 310 RQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASES------IVCTQPRKIAAMT 363

Query: 64  TAKRVAYEL-GLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLSRYSVIIL 122
              RV  E  G      V     +      S  + +MTD  LL+    D  LS  S +I+
Sbjct: 364 LTDRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCVII 423

Query: 123 DEAHERSLNTDILIGMLSRIIKTRQKFYDEQQKVILSGGTISPEKMVFPLKLVLMSATLR 182
           DEAHERSLNTD+L+ +                                 L+LV+MSAT  
Sbjct: 424 DEAHERSLNTDLLLAL-----------------------LRKLLSRRIDLRLVIMSATAD 460

Query: 183 VQDFTSGRLFHTPPPVIEVPTRQFPV-TVYFARKTEKTDYIG--AAY-----KKVLTIHK 234
                S  LF     ++ V  R FPV  VY    TE+   +G  A+Y     K  + IHK
Sbjct: 461 ANQL-SQYLFDC--GILHVNGRNFPVEIVYSPSGTEENSVVGRIASYAGDVVKMAVEIHK 517

Query: 235 RLPPGGILVFVTGQREVEDLCRKL 258
               G IL F+T Q EVE  C + 
Sbjct: 518 TEKEGTILAFLTSQAEVEWACERF 541



 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 426 VLPLYAMLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSS 485
            LPL+  L    Q  VF+      R V+ ATN+AETSLTIPG+KYV+D+G  K  KY+  
Sbjct: 548 ALPLHGKLSFEEQFMVFQNYPGR-RKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPR 606

Query: 486 NGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGV 545
            GM   +V  +                PG CYRLYS   F++   +  P E+ +V + GV
Sbjct: 607 TGMSILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEP-EIRRVHL-GV 664

Query: 546 VLL 548
            LL
Sbjct: 665 ALL 667


>AT2G47680.1 | Symbols:  | zinc finger (CCCH type) helicase family
           protein | chr2:19545828-19550871 REVERSE LENGTH=1015
          Length = 1015

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 82/136 (60%), Gaps = 10/136 (7%)

Query: 2   MEQEIMEAITDHSHVIICGETGCGKTTQVPQFLYEAGYGSSKSHVHNGIIGVTQPRRVAV 61
           M++ I++ I ++   +I GE GCGK++QVPQFL EA             I  TQPRR AV
Sbjct: 31  MKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAP---------ILCTQPRRFAV 81

Query: 62  LATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLRELQNDILLS-RYSVI 120
           +A AK VA      LG E+G+ + + K + E   I F T G+LL E+ +  L + +Y VI
Sbjct: 82  VAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALKYKVI 141

Query: 121 ILDEAHERSLNTDILI 136
           ILDE HERS+ +D+++
Sbjct: 142 ILDEVHERSVESDLVL 157



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 450 RLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYEVQWIXXXXXXXXXXXXX 509
           R V++ATN+AE+S+TIP + YV+D+ R     +D S   +  ++ W+             
Sbjct: 322 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTG 381

Query: 510 XXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVL 547
               G  YRL  SA F N+  ++ P  + K+ +   VL
Sbjct: 382 RTCDGEVYRLVPSAFF-NKLEEHEPPSILKLSLRQQVL 418