Miyakogusa Predicted Gene

Lj0g3v0210699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0210699.1 tr|B9MZV3|B9MZV3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_595599 PE=4
SV=1,58.42,2e-17,seg,NULL,CUFF.13534.1
         (347 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05330.1 | Symbols: ATN, ATTAN | cyclin family | chr3:1519162...   153   2e-37

>AT3G05330.1 | Symbols: ATN, ATTAN | cyclin family |
           chr3:1519162-1521159 REVERSE LENGTH=444
          Length = 444

 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 125/187 (66%), Gaps = 28/187 (14%)

Query: 1   MSLPAMLVGETVGEILQATQFAREIVSAVGNK---------FASED--PKTPMSQRPNQK 49
           MSLPAML+GETV EILQA+Q  R+IV A+  K          + ED  PKTP +Q+ +++
Sbjct: 103 MSLPAMLLGETVNEILQASQVTRDIVDAIAPKKSRKSRRLTMSQEDDGPKTPETQQKSRE 162

Query: 50  ASPES-NTQLKARRKKEKQ---TKNDSPPSLQRARSRINFKVSPPKVRELDLQN-HRYLA 104
            +PE+ ++ +KARRKKEKQ   +++DSPPSLQRARSRI F+   P+V+  + +N  R+LA
Sbjct: 163 QNPETVSSNIKARRKKEKQNRRSESDSPPSLQRARSRIAFRTISPQVKGNNGENSFRHLA 222

Query: 105 NRVSPRNKPWARKTVLFPNPLFLXXXXXXXXXXXXXFCKTRSPIISR--------NRGTP 156
           NRVSP++KPW +K VLFPNPLF+             F +T SP+I+R        N+ TP
Sbjct: 223 NRVSPKHKPWVKKAVLFPNPLFI----SGTATQQAKFSRTMSPVIARNEISSIKNNKETP 278

Query: 157 HKFLIKT 163
           +KFLIK+
Sbjct: 279 YKFLIKS 285