Miyakogusa Predicted Gene

Lj0g3v0210329.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0210329.1 tr|F2CSI2|F2CSI2_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,40.24,1e-17,seg,NULL; no
description,NULL; SUBFAMILY NOT NAMED,NULL; FAS-ASSOCIATED
PROTEIN,NULL,CUFF.13501.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10790.1 | Symbols:  | UBX domain-containing protein | chr4:6...    77   1e-14

>AT4G10790.1 | Symbols:  | UBX domain-containing protein |
          chr4:6640752-6643035 REVERSE LENGTH=480
          Length = 480

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 35/41 (85%)

Query: 1  MADVADKLAYFQAITGLEDPDLCTEILAAHGWDLELAISSF 41
          M D  DKL YFQAITGLED DLCTEIL AHGWDLELAISSF
Sbjct: 1  MVDTVDKLGYFQAITGLEDADLCTEILQAHGWDLELAISSF 41