Miyakogusa Predicted Gene

Lj0g3v0209919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0209919.1 CUFF.13463.1
         (285 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41020.2 | Symbols:  | WW domain-containing protein | chr2:17...   101   7e-22
AT2G41020.1 | Symbols:  | WW domain-containing protein | chr2:17...   100   1e-21

>AT2G41020.2 | Symbols:  | WW domain-containing protein |
           chr2:17117425-17120012 FORWARD LENGTH=382
          Length = 382

 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 79/148 (53%), Gaps = 18/148 (12%)

Query: 96  DIDVAAQDAVLREQEIATQIIIRSQREV-RAVASPTEENSDIFSERRDPNALKEHLMKMA 154
           DI+ AA  A+LREQEI TQ II+ QRE   +VA  ++ N+DI  +R DPNALKEHL+K  
Sbjct: 31  DIESAANTALLREQEIETQKIIQGQREAGTSVAGDSKHNTDILRDRADPNALKEHLLKFT 90

Query: 155 SEHRAEMAVKRGKAPRPXXXXXXXXXXXXXXXXXXXXDAPKLNATTGSHTFS-QPEPKLD 213
           + HRAE A KRG +                         P   A  G    S +PEP   
Sbjct: 91  ANHRAEAAAKRGGS--------VSTCGEGNVDVGNGYGIPGGVAYAGHSELSGKPEPT-- 140

Query: 214 RSSEQEPGAKELPEYLKQKLRARGILKD 241
                   +  LPEYLKQKL+ARGIL+D
Sbjct: 141 ------NASNNLPEYLKQKLKARGILRD 162


>AT2G41020.1 | Symbols:  | WW domain-containing protein |
           chr2:17117425-17120901 FORWARD LENGTH=463
          Length = 463

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 79/148 (53%), Gaps = 18/148 (12%)

Query: 96  DIDVAAQDAVLREQEIATQIIIRSQREV-RAVASPTEENSDIFSERRDPNALKEHLMKMA 154
           DI+ AA  A+LREQEI TQ II+ QRE   +VA  ++ N+DI  +R DPNALKEHL+K  
Sbjct: 31  DIESAANTALLREQEIETQKIIQGQREAGTSVAGDSKHNTDILRDRADPNALKEHLLKFT 90

Query: 155 SEHRAEMAVKRGKAPRPXXXXXXXXXXXXXXXXXXXXDAPKLNATTGSHTFS-QPEPKLD 213
           + HRAE A KRG +                         P   A  G    S +PEP   
Sbjct: 91  ANHRAEAAAKRGGS--------VSTCGEGNVDVGNGYGIPGGVAYAGHSELSGKPEPT-- 140

Query: 214 RSSEQEPGAKELPEYLKQKLRARGILKD 241
                   +  LPEYLKQKL+ARGIL+D
Sbjct: 141 ------NASNNLPEYLKQKLKARGILRD 162