Miyakogusa Predicted Gene

Lj0g3v0208729.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208729.1 Non Chatacterized Hit- tr|B6TCD4|B6TCD4_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,52.5,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; COILIN
P80,Coilin,CUFF.14321.1
         (599 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13030.1 | Symbols:  | sphere organelles protein-related | ch...   209   5e-54

>AT1G13030.1 | Symbols:  | sphere organelles protein-related |
           chr1:4444284-4447278 REVERSE LENGTH=608
          Length = 608

 Score =  209 bits (532), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/276 (45%), Positives = 166/276 (60%), Gaps = 18/276 (6%)

Query: 334 PVLEKDEQLPIKDNNCKVSDVNQQXXXXXXXXDDVIPVEIRPGHIRFQPLRKDQEVPQNQ 393
           PV+  D Q   K+ +C+  +  Q         D+V+PVE+RPGHIRF+PL    E   + 
Sbjct: 295 PVITIDHQ-ATKEKHCETLENQQAEEVSDGFGDEVVPVEVRPGHIRFKPLAGTDEASLDS 353

Query: 394 FP-VETFCWNGITSKKKGQKWGKERIS---SWKQDDHENSSQEWRAAQKAEREHLSN-PV 448
            P VE   WNG  +KKKGQKWG E+      + QD +E+++      Q AE E L+N P+
Sbjct: 354 EPLVENVLWNGNMTKKKGQKWGTEKSGFSKRYAQDFNEDAT-----TQPAEAETLANCPI 408

Query: 449 DFEKLTPYTSLPKEGDVIAYRLIELSSSWTPELSSFRVGKISQYDAKSNRICLEPVSEFP 508
           D+E+L  YT   K+GDVIAYRLIEL+SSWTPE+SSFRVGKIS YD  S  + L PV EFP
Sbjct: 409 DYEQLVAYTGSVKKGDVIAYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFP 468

Query: 509 FVLEEKTDQETS-SGQPDPPLYQEDGSLEVEYTSLADVRMVKHXXXXXXXXXXXXX---- 563
             +E+KT+++     QPD  LY+EDGSLE+E+++L DVR VK                  
Sbjct: 469 --IEKKTEEDDDFCMQPDTSLYKEDGSLEIEFSALLDVRSVKTSSSDSAEVAKSALPEPD 526

Query: 564 XLVNPPKATNGSTDEKPAKENGGVSVWDEINEALNA 599
                PK +     + PAKENG VS W+E++EAL+A
Sbjct: 527 QSAKKPKLSANKELQTPAKENGEVSPWEELSEALSA 562



 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 5  ARLRLLFEDRHMLSKSKTKEGLNRCWFLLKPQ-HTTISDLTSNLLDAFRLHRTCPGGIIL 63
           R+RL+FEDR +LSK + K+GL R W +L  + H TIS+ + ++   F L   CP G+ L
Sbjct: 6  VRVRLVFEDRRILSKYQKKQGLTRSWVVLNRKCHRTISEFSDHIFHTFSLCEACPHGLSL 65

Query: 64 SMDGFVLPSFESTCILKDNDIVWVKRK 90
          SM+GFVLP FES+C+LKD DIV VK+K
Sbjct: 66 SMEGFVLPPFESSCVLKDKDIVCVKKK 92