Miyakogusa Predicted Gene

Lj0g3v0208229.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208229.1 tr|G7J6N4|G7J6N4_MEDTR ATP-dependent DNA helicase
recG OS=Medicago truncatula GN=MTR_3g079920 PE=4
S,68.57,7e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.13346.1
         (70 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01440.1 | Symbols:  | DEAD/DEAH box RNA helicase family prot...   105   6e-24

>AT2G01440.1 | Symbols:  | DEAD/DEAH box RNA helicase family protein
            | chr2:193950-199056 REVERSE LENGTH=973
          Length = 973

 Score =  105 bits (262), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 58/70 (82%)

Query: 1   MLEGLGTQIEKDGLLDKYRRPENNAVCTEEWSCLTKKVLELLPYTLTSSQLQAVSEIIWD 60
           ML+ LGT+IEKD LL+K+R+P  N+V  EEWS LTK  L+ LPY+LT SQL AVSEIIWD
Sbjct: 477 MLQSLGTKIEKDVLLEKFRKPVLNSVYIEEWSTLTKSFLKALPYSLTPSQLSAVSEIIWD 536

Query: 61  LKRPVPMNRL 70
           LKRPVPMNRL
Sbjct: 537 LKRPVPMNRL 546