Miyakogusa Predicted Gene

Lj0g3v0208169.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208169.2 Non Chatacterized Hit- tr|I1IHS4|I1IHS4_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,46.36,1e-18,no
description,Thioredoxin-like fold; PROTEIN DISULFIDE ISOMERASE,NULL;
Thioredoxin-like,Thioredoxin,CUFF.13366.2
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:127488...   201   3e-52
AT4G08930.1 | Symbols: ATAPRL6, APRL6 | APR-like 6 | chr4:572951...   176   1e-44
AT1G34780.2 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:127488...   144   3e-35
AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:992465...   110   7e-25
AT5G18120.1 | Symbols: ATAPRL7, APRL7 | APR-like 7 | chr5:599138...   110   8e-25
AT2G32920.1 | Symbols: ATPDIL2-3, PDI9, ATPDI9, PDIL2-3 | PDI-li...    50   1e-06
AT3G54960.2 | Symbols: ATPDIL1-3, PDIL1-3 | PDI-like 1-3 | chr3:...    49   2e-06
AT3G54960.1 | Symbols: ATPDIL1-3, PDI1, ATPDI1, PDIL1-3 | PDI-li...    49   3e-06

>AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 |
           chr1:12748835-12750124 REVERSE LENGTH=310
          Length = 310

 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/153 (64%), Positives = 119/153 (77%), Gaps = 4/153 (2%)

Query: 38  CPAETIFDFILGFPDKTCSVP--DSLRSIRYVGVTEGDEVTLQKALNMVHKNNQEYVAIL 95
           C  ++  D I G  D+TCSV   +S    R+V VTEGDE  LQ AL+M+HKN  +YVA+L
Sbjct: 28  CATKSAKDSIFGLRDQTCSVSGVESDERPRFVAVTEGDERWLQIALDMIHKNKCDYVALL 87

Query: 96  FYASWCPFSRIFRPVFSVLSLLYPSIPHFAIEESSVRPSTLSKYGVHGFPTLFILNSTMR 155
           FYASWCPFSR FRP F V+S LY SIPHFAI+ESS++PSTLSKYGVHGFPTL +LNSTMR
Sbjct: 88  FYASWCPFSRSFRPSFDVISSLYSSIPHFAIKESSIKPSTLSKYGVHGFPTLLLLNSTMR 147

Query: 156 VRYQGSRTLGSLVGFYSDVTGIRIDSLDQVSLD 188
            RY+G+R L SLV FYSDVTG  I++LD+ SL+
Sbjct: 148 ARYRGTRMLDSLVAFYSDVTG--IETLDKTSLE 178


>AT4G08930.1 | Symbols: ATAPRL6, APRL6 | APR-like 6 |
           chr4:5729511-5730724 FORWARD LENGTH=295
          Length = 295

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 114/150 (76%), Gaps = 12/150 (8%)

Query: 37  VCPAETIFDFILGFPDKTCSVPDSLRSIRYVG-VTEGDEVTLQKALNMVHKNNQ-EYVAI 94
           +CP E+  D+ILGF DK+        ++   G VTEGD+  LQ A +MV K N+ +Y A+
Sbjct: 28  ICPRESAKDYILGFRDKS--------ALHRPGFVTEGDDRWLQMAADMVDKKNKCDYAAL 79

Query: 95  LFYASWCPFSRIFRPVFSVLSLLYPSIPHFAIEESSVRPSTLSKYGVHGFPTLFILNSTM 154
           LFYASWCPFSR+ RP F ++SLLY S+PHFAIEESSV+ STLSKYGVHGFPT+ ++NSTM
Sbjct: 80  LFYASWCPFSRLVRPSFDLMSLLYSSVPHFAIEESSVKASTLSKYGVHGFPTIILMNSTM 139

Query: 155 RVRYQGSRTLGSLVGFYSDVTGIRIDSLDQ 184
            V Y+GSRTL SLV FY+DVTG  I+++D+
Sbjct: 140 LVVYRGSRTLDSLVAFYTDVTG--IETMDE 167


>AT1G34780.2 | Symbols: ATAPRL4, APRL4 | APR-like 4 |
           chr1:12748835-12750124 REVERSE LENGTH=281
          Length = 281

 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 95/153 (62%), Gaps = 33/153 (21%)

Query: 38  CPAETIFDFILGFPDKTCSVP--DSLRSIRYVGVTEGDEVTLQKALNMVHKNNQEYVAIL 95
           C  ++  D I G  D+TCSV   +S    R+V VTEGDE  LQ AL+M+HKN  +YVA+L
Sbjct: 28  CATKSAKDSIFGLRDQTCSVSGVESDERPRFVAVTEGDERWLQIALDMIHKNKCDYVALL 87

Query: 96  FYASWCPFSRIFRPVFSVLSLLYPSIPHFAIEESSVRPSTLSKYGVHGFPTLFILNSTMR 155
           FYASWCPFS                             STLSKYGVHGFPTL +LNSTMR
Sbjct: 88  FYASWCPFS-----------------------------STLSKYGVHGFPTLLLLNSTMR 118

Query: 156 VRYQGSRTLGSLVGFYSDVTGIRIDSLDQVSLD 188
            RY+G+R L SLV FYSDVTG  I++LD+ SL+
Sbjct: 119 ARYRGTRMLDSLVAFYSDVTG--IETLDKTSLE 149


>AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 |
           chr3:992465-994315 FORWARD LENGTH=300
          Length = 300

 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 12/166 (7%)

Query: 15  MFLCCGTLSC-TAHPRRVSLSSTVCPAE-TIFDFILGFPDKTCSVPDSLRSIRYVGVTEG 72
           +F+C   +SC T+      +  +VC  E  +F F     D     P SL     + V +G
Sbjct: 8   LFVCAIAVSCFTSGSASSPVDFSVCNYEFELFRF-----DLEAKCPPSLYPTPPIEV-DG 61

Query: 73  DEVTLQKALNMVHKNNQEYVAILFYASWCPFSRIFRPVFSVLSLLYPSIPHFAIEESSVR 132
           D  +L + +   H N   Y+++LFYASWCPFSR  RP F +LS ++P I H A+E S   
Sbjct: 62  D--SLDRLMASQHGN--AYMSVLFYASWCPFSRAVRPKFDMLSSMFPQIQHLAVEHSQAL 117

Query: 133 PSTLSKYGVHGFPTLFILNSTMRVRYQGSRTLGSLVGFYSDVTGIR 178
           PS  S+YG+H  P++ ++N T+  RY G + L SL+ FY + TG++
Sbjct: 118 PSVFSRYGIHSLPSILMVNQTLNARYHGRKDLISLIEFYEEATGLQ 163


>AT5G18120.1 | Symbols: ATAPRL7, APRL7 | APR-like 7 |
           chr5:5991385-5993696 FORWARD LENGTH=289
          Length = 289

 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 6/125 (4%)

Query: 71  EGDEVTLQKALNMVHKNNQEYVAILFYASWCPFSRIFRPVFSVLSLLYPSIPHFAIEESS 130
           E D   L K ++  H N   Y++ILFY S CPFSR  RP F VLS ++P I H  +E+S 
Sbjct: 54  EVDGDLLDKLMDANHGN--AYISILFYTSRCPFSRAVRPKFDVLSSMFPHITHLIVEQSQ 111

Query: 131 VRPSTLSKYGVHGFPTLFILNSTMRVRYQGSRTLGSLVGFYSDVTGIR----IDSLDQVS 186
             PS  S+YG+H  P++ ++N TM++RY G + L SL+ FY + TG++    +D  +  S
Sbjct: 112 ALPSVFSRYGIHSLPSILMVNQTMKMRYHGPKDLASLIQFYKETTGLKPVQYMDEGEPTS 171

Query: 187 LDNVG 191
           LD  G
Sbjct: 172 LDTDG 176


>AT2G32920.1 | Symbols: ATPDIL2-3, PDI9, ATPDI9, PDIL2-3 | PDI-like
           2-3 | chr2:13962502-13965406 REVERSE LENGTH=440
          Length = 440

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 87  NNQEYVAILFYASWCPFSRIFRPVFSVLSLLYPSIPHFAIEESSVRPSTLSKYGVHGFPT 146
           N+   V + F+A WC   +   P +  ++ +   +   A  ++    S    YG+ GFPT
Sbjct: 46  NSNGVVLVEFFAPWCGHCKALTPTWEKVANILKGVATVAAIDADAHQSAAQDYGIKGFPT 105

Query: 147 LFI-LNSTMRVRYQGSRTLGSLVGF-YSDVTGIRIDSLDQVS 186
           + + +     + YQG+R   S+  F Y  + G+  D L+  S
Sbjct: 106 IKVFVPGKAPIDYQGARDAKSIANFAYKQIKGLLSDRLEGKS 147


>AT3G54960.2 | Symbols: ATPDIL1-3, PDIL1-3 | PDI-like 1-3 |
           chr3:20363895-20366822 REVERSE LENGTH=518
          Length = 518

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 88  NQEYVAILFYASWCPFSRIFRPVFSVLSLLYPSIPHFAIEESSVRPSTLSKYGVHGFPTL 147
           N  +  + FYA WC   +   P ++  +     +   A  +++       KY + GFPT+
Sbjct: 115 NNSFAMVEFYAPWCGACQALTPEYAAAATELKGLAALAKIDATEEGDLAQKYEIQGFPTV 174

Query: 148 FI-LNSTMRVRYQGSRTLGSLV 168
           F+ ++  MR  Y+G RT   +V
Sbjct: 175 FLFVDGEMRKTYEGERTKDGIV 196


>AT3G54960.1 | Symbols: ATPDIL1-3, PDI1, ATPDI1, PDIL1-3 | PDI-like
           1-3 | chr3:20363514-20366822 REVERSE LENGTH=579
          Length = 579

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 88  NQEYVAILFYASWCPFSRIFRPVFSVLSLLYPSIPHFAIEESSVRPSTLSKYGVHGFPTL 147
           N  +  + FYA WC   +   P ++  +     +   A  +++       KY + GFPT+
Sbjct: 115 NNSFAMVEFYAPWCGACQALTPEYAAAATELKGLAALAKIDATEEGDLAQKYEIQGFPTV 174

Query: 148 FI-LNSTMRVRYQGSRTLGSLV 168
           F+ ++  MR  Y+G RT   +V
Sbjct: 175 FLFVDGEMRKTYEGERTKDGIV 196