Miyakogusa Predicted Gene

Lj0g3v0208169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208169.1 Non Chatacterized Hit- tr|I1IQZ4|I1IQZ4_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,32.39,2e-18,no
description,Methyl-CpG DNA binding; seg,NULL; DNA-binding
domain,DNA-binding, integrase-type; MBD,CUFF.13366.1
         (716 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22310.2 | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain ...    94   5e-19
AT1G22310.1 | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain ...    93   6e-19

>AT1G22310.2 | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain 8 |
           chr1:7881714-7883644 REVERSE LENGTH=524
          Length = 524

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 26/203 (12%)

Query: 148 IDVVGGSGLNVPVAVVDGSSSQTKSRKRGRPRKNQEAVVSVPVGNGXXXXXXXXXXXXXX 207
           +  VG SG+++         S +  RKRGRP KN+E ++++   +               
Sbjct: 222 VSRVGSSGISL--------DSNSVKRKRGRPPKNKEEIMNLEKRDSAIVNISAFDKEELV 273

Query: 208 XXXXXXKNGLV----VGDVG-DPFVEQLIERTQGLVTESQMREFMESLEGVWASDRKKRR 262
                 +  +V    +  V  DP+ E+L   T GL T+ ++  F+E L G W +  KK++
Sbjct: 274 VNLENREGTIVDLSALASVSEDPYEEELRRITVGLKTKEEILGFLEQLNGEWVNIGKKKK 333

Query: 263 IVDARILCD---LLPPGWKLVLILQRRAGRFSVLCRFYKSPDGHQFESYKEVCTHLS--- 316
           +V+A   CD    LP GW+L+L ++R+     + CR Y SPDG QFE+ KEV T+L    
Sbjct: 334 VVNA---CDYGGYLPRGWRLMLYIKRKGSNLLLACRRYISPDGQQFETCKEVSTYLRSLL 390

Query: 317 ---SNNGNFAMASENHQHVGHVP 336
              S N ++ + S+N + +G  P
Sbjct: 391 ESPSKNQHYYLQSDN-KTLGQQP 412


>AT1G22310.1 | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain 8 |
           chr1:7881714-7883418 REVERSE LENGTH=425
          Length = 425

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 26/203 (12%)

Query: 148 IDVVGGSGLNVPVAVVDGSSSQTKSRKRGRPRKNQEAVVSVPVGNGXXXXXXXXXXXXXX 207
           +  VG SG+++         S +  RKRGRP KN+E ++++   +               
Sbjct: 123 VSRVGSSGISL--------DSNSVKRKRGRPPKNKEEIMNLEKRDSAIVNISAFDKEELV 174

Query: 208 XXXXXXKNGLV----VGDVG-DPFVEQLIERTQGLVTESQMREFMESLEGVWASDRKKRR 262
                 +  +V    +  V  DP+ E+L   T GL T+ ++  F+E L G W +  KK++
Sbjct: 175 VNLENREGTIVDLSALASVSEDPYEEELRRITVGLKTKEEILGFLEQLNGEWVNIGKKKK 234

Query: 263 IVDARILCD---LLPPGWKLVLILQRRAGRFSVLCRFYKSPDGHQFESYKEVCTHLS--- 316
           +V+A   CD    LP GW+L+L ++R+     + CR Y SPDG QFE+ KEV T+L    
Sbjct: 235 VVNA---CDYGGYLPRGWRLMLYIKRKGSNLLLACRRYISPDGQQFETCKEVSTYLRSLL 291

Query: 317 ---SNNGNFAMASENHQHVGHVP 336
              S N ++ + S+N + +G  P
Sbjct: 292 ESPSKNQHYYLQSDN-KTLGQQP 313