Miyakogusa Predicted Gene

Lj0g3v0208019.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208019.1 Non Chatacterized Hit- tr|I1JJN0|I1JJN0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57232
PE,89.12,0,RNA-binding domain, RBD,NULL; CCCH zinc finger,NULL; no
description,Nucleotide-binding, alpha-beta p,CUFF.13341.1
         (485 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07360.1 | Symbols:  | CCCH-type zinc fingerfamily protein wi...   628   e-180
AT2G29580.1 | Symbols:  | CCCH-type zinc fingerfamily protein wi...   614   e-176
AT5G07060.2 | Symbols:  | CCCH-type zinc fingerfamily protein wi...   435   e-122
AT5G07060.1 | Symbols:  | CCCH-type zinc fingerfamily protein wi...   434   e-122
AT5G04210.1 | Symbols:  | CCCH-type zinc fingerfamily protein wi...    97   2e-20
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47...    64   2e-10
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47...    60   3e-09
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ...    57   2e-08
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47...    55   1e-07
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R...    54   2e-07
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45...    52   9e-07
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif...    51   2e-06

>AT1G07360.1 | Symbols:  | CCCH-type zinc fingerfamily protein with
           RNA-binding domain | chr1:2260562-2262795 REVERSE
           LENGTH=481
          Length = 481

 Score =  628 bits (1620), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 297/375 (79%), Positives = 327/375 (87%), Gaps = 9/375 (2%)

Query: 1   MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRDHEADGWERSDFPIICESCLGD+PYVRMTKA YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAE 120
           DARYKKTEICQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I ++D+IPKSDVNRE+FAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREYFAE 120

Query: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR 180
           EHDR+ARAGLDYESS+GK+RPNDTILKLQRTTPYYKRNRAH+CSF+IRGECTRGAECPYR
Sbjct: 121 EHDRKARAGLDYESSFGKMRPNDTILKLQRTTPYYKRNRAHVCSFFIRGECTRGAECPYR 180

Query: 181 HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVT 240
           HEMP TGELSQQNIKDRYYGVNDPVAMKLLGKAGEM TL++P+DESIKTLYVGGL++R+ 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMGTLESPDDESIKTLYVGGLNSRIL 240

Query: 241 EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGLRLKLMWGR 300
           EQD+RD FYAHGEIESI+++  +ACAFVTYT+R           N+LVI G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWGR 300

Query: 301 PQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMVYYNNPPP--QGRSYYP 358
           P   KP+ DG   A QQ  VAHSGLLPRAVISQQ NQ       YY +PPP  Q + YYP
Sbjct: 301 P---KPDQDG---ANQQGGVAHSGLLPRAVISQQHNQPPPM-QQYYMHPPPANQDKPYYP 353

Query: 359 SMDPQRMGAVTANQD 373
           SMDPQRMGAV + Q+
Sbjct: 354 SMDPQRMGAVISTQE 368


>AT2G29580.1 | Symbols:  | CCCH-type zinc fingerfamily protein with
           RNA-binding domain | chr2:12652011-12654158 FORWARD
           LENGTH=483
          Length = 483

 Score =  614 bits (1584), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 294/373 (78%), Positives = 324/373 (86%), Gaps = 9/373 (2%)

Query: 1   MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR 60
           MAHR+LRDHEADGWERSDFPIICESCLGD+PYVRMTKA YDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRILRDHEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAE 120
           DARYKKTE+CQTC KLKNVCQVCLLDLEYGLPVQVRDTAL+I ++D+IPKSDVNREFFAE
Sbjct: 61  DARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQVRDTALNISTHDSIPKSDVNREFFAE 120

Query: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR 180
           EHDR+ RAGLDYESS+GK+RPNDTI  LQRTTPYYKRNRAHICSF+IRGECTRG ECPYR
Sbjct: 121 EHDRKTRAGLDYESSFGKIRPNDTIRMLQRTTPYYKRNRAHICSFFIRGECTRGDECPYR 180

Query: 181 HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVT 240
           HEMP TGELSQQNIKDRYYGVNDPVA+KLLGKAGEM TL++PED+SI+TLYVGGL++RV 
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMGTLESPEDQSIRTLYVGGLNSRVL 240

Query: 241 EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGLRLKLMWGR 300
           EQD+RD FYAHGEIESI+++ ++ACAFVTYTTR           N+LV+ G RLKL WGR
Sbjct: 241 EQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGR 300

Query: 301 PQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMVYY-----NNPPPQGRS 355
           PQ  KP+ DGS+   QQ SVAHSGLLPRAVISQQQNQ     + YY       PP Q R 
Sbjct: 301 PQVPKPDQDGSN---QQGSVAHSGLLPRAVISQQQNQPPPM-LQYYMHPPPPQPPHQDRP 356

Query: 356 YYPSMDPQRMGAV 368
           +YPSMDPQRMGAV
Sbjct: 357 FYPSMDPQRMGAV 369


>AT5G07060.2 | Symbols:  | CCCH-type zinc fingerfamily protein with
           RNA-binding domain | chr5:2194159-2195872 REVERSE
           LENGTH=355
          Length = 355

 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/373 (58%), Positives = 261/373 (69%), Gaps = 49/373 (13%)

Query: 1   MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR 60
           M+HR   DH ADGWE +DFPI CESC GD+PY+RMT+A+YDKECKIC+RPFT FRWRPGR
Sbjct: 1   MSHR---DHGADGWESADFPITCESCFGDNPYMRMTRADYDKECKICSRPFTAFRWRPGR 57

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAE 120
           +AR+KKTEICQTCSKLKNVCQVCLLDL +GLPVQVRD+AL+I+S+ ++P S VNRE+FA+
Sbjct: 58  NARFKKTEICQTCSKLKNVCQVCLLDLGFGLPVQVRDSALNINSHYSVPMSHVNREYFAD 117

Query: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR 180
           EHD + RAGLDYESS+GK++PNDTILKLQR TP Y++NR  ICSFY  G+C RGAEC +R
Sbjct: 118 EHDPKTRAGLDYESSFGKMQPNDTILKLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFR 177

Query: 181 HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVT 240
           HEMP TGELS QNI+DRYY VNDPVAMKLL KAGEM TL+ PEDESIKTLYVGGL++R+ 
Sbjct: 178 HEMPETGELSHQNIRDRYYSVNDPVAMKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIF 237

Query: 241 EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGLRLKLMWGR 300
           EQD+ D+FYA+GE+ESI+++ +                                      
Sbjct: 238 EQDIHDHFYAYGEMESIRVMAE-------------------------------------- 259

Query: 301 PQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMVYYNNPPPQGRSYYPSM 360
                   DG              +    +ISQQQNQ       Y   PPP   S+YPSM
Sbjct: 260 --------DGKYDQSGSNQQQQGSIAHTGLISQQQNQHSQMQQYYMQPPPPNEYSHYPSM 311

Query: 361 DPQRMGAVTANQD 373
           D QRMGA  + Q+
Sbjct: 312 DTQRMGAAFSTQE 324


>AT5G07060.1 | Symbols:  | CCCH-type zinc fingerfamily protein with
           RNA-binding domain | chr5:2194394-2195872 REVERSE
           LENGTH=363
          Length = 363

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/373 (58%), Positives = 261/373 (69%), Gaps = 49/373 (13%)

Query: 1   MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR 60
           M+HR   DH ADGWE +DFPI CESC GD+PY+RMT+A+YDKECKIC+RPFT FRWRPGR
Sbjct: 1   MSHR---DHGADGWESADFPITCESCFGDNPYMRMTRADYDKECKICSRPFTAFRWRPGR 57

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAE 120
           +AR+KKTEICQTCSKLKNVCQVCLLDL +GLPVQVRD+AL+I+S+ ++P S VNRE+FA+
Sbjct: 58  NARFKKTEICQTCSKLKNVCQVCLLDLGFGLPVQVRDSALNINSHYSVPMSHVNREYFAD 117

Query: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR 180
           EHD + RAGLDYESS+GK++PNDTILKLQR TP Y++NR  ICSFY  G+C RGAEC +R
Sbjct: 118 EHDPKTRAGLDYESSFGKMQPNDTILKLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFR 177

Query: 181 HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVT 240
           HEMP TGELS QNI+DRYY VNDPVAMKLL KAGEM TL+ PEDESIKTLYVGGL++R+ 
Sbjct: 178 HEMPETGELSHQNIRDRYYSVNDPVAMKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIF 237

Query: 241 EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGLRLKLMWGR 300
           EQD+ D+FYA+GE+ESI+++ +                                      
Sbjct: 238 EQDIHDHFYAYGEMESIRVMAE-------------------------------------- 259

Query: 301 PQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMVYYNNPPPQGRSYYPSM 360
                   DG              +    +ISQQQNQ       Y   PPP   S+YPSM
Sbjct: 260 --------DGKYDQSGSNQQQQGSIAHTGLISQQQNQHSQMQQYYMQPPPPNEYSHYPSM 311

Query: 361 DPQRMGAVTANQD 373
           D QRMGA  + Q+
Sbjct: 312 DTQRMGAAFSTQE 324


>AT5G04210.1 | Symbols:  | CCCH-type zinc fingerfamily protein with
           RNA-binding domain | chr5:1155055-1155724 REVERSE
           LENGTH=193
          Length = 193

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 11/161 (6%)

Query: 162 ICSFYIRG-ECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLD 220
           IC  +  G +CTRG  C YRHE+    +   ++      G+ +P  +++L +A     L 
Sbjct: 16  ICPLFDAGRQCTRGTMCLYRHEINRGLDCHGRS------GLENPFVLEVLARACNTGPLK 69

Query: 221 APEDESIKTLYVGGL-DARVTEQDLRDNFYAHGEIESIKMVLQRA---CAFVTYTTRXXX 276
            PED+SIKTLY+  L ++ V EQD+RD+F  +GEIESI +   R    CAF+TYTTR   
Sbjct: 70  PPEDQSIKTLYIRRLINSSVLEQDIRDHFCPYGEIESIVIFPHRGGGTCAFLTYTTRLAA 129

Query: 277 XXXXXXXXNKLVIKGLRLKLMWGRPQSAKPESDGSDQARQQ 317
                   +   IKG R+KL+WG  +  + +  G+  +  Q
Sbjct: 130 EKAMLELSSWTDIKGQRVKLLWGPTEKWQHKMTGAAISSTQ 170


>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
           chr1:18357236-18360150 REVERSE LENGTH=445
          Length = 445

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 202 NDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVL 261
           N   A+ L G  G   ++   E  +  T++VGGLDA VTE+DL   F   GE+ S+K+ +
Sbjct: 302 NGSQALTLAGGHGGNGSMSDGESNN-STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV 360

Query: 262 QRACAFVTYTTRXXXXXXXXXXXNKLVIKGLRLKLMWGRPQSAKPESDGSDQ 313
            + C FV +  R           N  VI    ++L WGR  + +  SD  +Q
Sbjct: 361 GKGCGFVQFANR-QSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQ 411


>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
           chr1:17424801-17427182 FORWARD LENGTH=432
          Length = 432

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 217 ATLDAPEDESIKT-LYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXX 275
            TL  PE + + T ++VGGLD+ VT++DL+  F   GEI S+K+ + + C FV +  R  
Sbjct: 292 GTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNR-P 350

Query: 276 XXXXXXXXXNKLVIKGLRLKLMWGR-PQSAKPESDGSDQ 313
                    N  VI    ++L WGR P + +P     +Q
Sbjct: 351 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQ 389


>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
           47C' | chr1:17432682-17434805 FORWARD LENGTH=434
          Length = 434

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 229 TLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXXXNKLV 288
           T++VGGLD+ VT++DL+  F   GEI S+K+ + + C FV +  R           N  V
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNR-PNAEEALEKLNGTV 365

Query: 289 IKGLRLKLMWGR-PQSAKP 306
           I    ++L WGR P + +P
Sbjct: 366 IGKQTVRLSWGRNPANKQP 384


>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
           chr3:6611398-6613823 REVERSE LENGTH=435
          Length = 435

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 211 GKAGEMATLDAPEDESIK-TLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVT 269
           G  G M      + ES   T++VGG+D  V ++DLR  F   GE+ S+K+ + + C FV 
Sbjct: 303 GSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQ 362

Query: 270 YTTRXXXXXXXXXXXNKLVIKGLRLKLMWGRPQSAKPESDGSDQ 313
           +  R           N  VI    ++L WGR  + +   D   Q
Sbjct: 363 FADR-KSAEDAIESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQ 405


>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
           motifs) family protein | chr1:3914895-3917941 FORWARD
           LENGTH=405
          Length = 405

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 217 ATLDAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXX 276
           A +    D +  T++VGGLDA VT+  L++ F  +GEI  +K+   + C FV ++ +   
Sbjct: 250 AGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK-SC 308

Query: 277 XXXXXXXXNKLVIKGLRLKLMWGRPQSAKPESDGS 311
                   N + + G  ++L WGR  S K   D S
Sbjct: 309 AEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPS 343


>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
           chr5:22295412-22298126 FORWARD LENGTH=387
          Length = 387

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 35/144 (24%)

Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
           D +  T++VGGLDA VT+ +L+  F   GE+  +K+   + C FV Y  +          
Sbjct: 256 DPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANK-ASAEHALSV 314

Query: 284 XNKLVIKGLRLKLMWGRPQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGM 343
            N   + G  ++L WGR                               ++Q +Q Q  G 
Sbjct: 315 LNGTQLGGQSIRLSWGRSP-----------------------------NKQSDQAQWNGG 345

Query: 344 VYYNNPP-PQGRSYY----PSMDP 362
            YY  PP PQG   Y    P+ DP
Sbjct: 346 GYYGYPPQPQGGYGYAAQPPTQDP 369


>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
           family protein | chr4:13554983-13557763 REVERSE
           LENGTH=415
          Length = 415

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
           D +  T++VG +D  VTE DL+  F   GE+  +K+   + C FV Y  R          
Sbjct: 274 DPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANR-ACAEQALSV 332

Query: 284 XNKLVIKGLRLKLMWGRPQSAK 305
            N   + G  ++L WGR  S K
Sbjct: 333 LNGTQLGGQSIRLSWGRSPSNK 354