Miyakogusa Predicted Gene

Lj0g3v0207759.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0207759.1 Non Chatacterized Hit- tr|K4CAS5|K4CAS5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,39.55,2e-17,seg,NULL,CUFF.13315.1
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02715.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...    72   2e-13

>AT4G02715.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:1202170-1202787 REVERSE LENGTH=205
          Length = 205

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 85/209 (40%), Gaps = 33/209 (15%)

Query: 1   METLVVVEQHRNQCYSRSKPQGHAQFGSSPSRDFIGFNCRNFQKSHG------------- 47
           METL+V  +HR+Q Y + K  GH +F S+PS+ F   NCR FQ   G             
Sbjct: 1   METLIVAVEHRDQYYGK-KSLGHDRFRSAPSKTFRQINCRTFQSGVGLLPRPKRTSSTPL 59

Query: 48  ---------SPKTPPHVNDNKIYGKKTTTKSSPIPINDKACRKDTTLSFSEDVTGGNGSF 98
                    SP++P  V     +    + ++SPIPI +  CR       S +      S 
Sbjct: 60  TKGALSQVQSPRSPKSVLPVFHHPSVDSGRTSPIPIAN--CRGSQIRRCSSEFVDKRRSL 117

Query: 99  LLSELWAGXXXXXXXXXXXXXXXXXXVQPKRTVSLNLPGSSPEVEXXXXXXXXXXXXGRE 158
             SELWAG                  +Q KRTVSL  P     V+               
Sbjct: 118 SYSELWAGPTYSNSPPPASVPIPKFSLQQKRTVSLTFPAPDSAVDIREVAKSAPVS---- 173

Query: 159 HVPSTRG--FFVNADSATETLCRILNLNI 185
             P++ G   F +  SAT TL R+LNL +
Sbjct: 174 --PTSSGDNPFRSTVSATMTLRRMLNLEL 200