Miyakogusa Predicted Gene

Lj0g3v0207679.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0207679.1 tr|I0Z1L2|I0Z1L2_9CHLO DNA glycosylase
OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,48.45,3e-19,DNA-glycosylase,DNA glycosylase; HhH-GPD,HhH-GPD
domain; no description,DNA glycosylase; 5-METHYLCYT,CUFF.13312.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein | ...   144   2e-35

>AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528416 FORWARD LENGTH=445
          Length = 445

 Score =  144 bits (362), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 80/103 (77%), Gaps = 1/103 (0%)

Query: 7   QVRAVISDFFRLCPDAQTCTQVSKDEIVEVIRKLGLHK-RAAMLQRFSREYLEENWTHVT 65
           Q R VISD F LC DA+T T+V ++EI  +I+ LGL K R  M+QR S EYL+E+WTHVT
Sbjct: 342 QTRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRLSLEYLQESWTHVT 401

Query: 66  QLHGVGKYAADAYAIFCTGKWDRVTPSDHKLVKYWEFLRLIYQ 108
           QLHGVGKYAADAYAIFC G WDRV P+DH L  YW++LR+ Y+
Sbjct: 402 QLHGVGKYAADAYAIFCNGNWDRVKPNDHMLNYYWDYLRIRYK 444