Miyakogusa Predicted Gene

Lj0g3v0206979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0206979.1 CUFF.13380.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:...   173   3e-44
AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA p...   101   2e-22
AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B | chr...    76   5e-15
AT3G23780.2 | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr...    75   2e-14
AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nuclea...    75   2e-14
AT1G29940.1 | Symbols: NRPA2 | nuclear RNA polymerase A2 | chr1:...    68   2e-12

>AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 |
            chr5:18247416-18257713 REVERSE LENGTH=1161
          Length = 1161

 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 86/94 (91%)

Query: 42   SGLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCK 101
             GLR+GEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR+CGLLGYYNYKLK  VC +CK
Sbjct: 1067 GGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCK 1126

Query: 102  NGDQISNMKLPYACKLLIQELQSMNIVPRLKLAD 135
            NGD I+ MKLPYACKLL QELQSMN+VPRLKL +
Sbjct: 1127 NGDNIATMKLPYACKLLFQELQSMNVVPRLKLTE 1160


>AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA
            polymerase family protein | chr4:11535684-11542200
            REVERSE LENGTH=1188
          Length = 1188

 Score =  101 bits (251), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/89 (52%), Positives = 56/89 (62%)

Query: 43   GLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKN 102
            GLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+   N K     C  CKN
Sbjct: 1088 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKN 1147

Query: 103  GDQISNMKLPYACKLLIQELQSMNIVPRL 131
               I  + +PYACKLL QEL SM I PR+
Sbjct: 1148 KTDIVQVYIPYACKLLFQELMSMAIAPRM 1176


>AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B |
            chr3:6195323-6200204 FORWARD LENGTH=1055
          Length = 1055

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 11/96 (11%)

Query: 41   FSGLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLLGYYNY---------K 91
            F G+R GEMERDCLIA+GAS  + ERL   SD  ++ +CR C    Y N          K
Sbjct: 953  FGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKT--YANVIERTPSSGRK 1010

Query: 92   LKIGVCPSCKNGDQISNMKLPYACKLLIQELQSMNI 127
            ++   C  C + D +  + +PY  KLL QEL SM I
Sbjct: 1011 IRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGI 1046


>AT3G23780.2 | Symbols: NRPD2A | nuclear RNA polymerase D2A |
            chr3:8567971-8573819 REVERSE LENGTH=1172
          Length = 1172

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 11/96 (11%)

Query: 41   FSGLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLLGYYNY---------K 91
            F G++ GEMERDCLIA+GAS  + ERL   SD  ++ +CR C    Y N          K
Sbjct: 1070 FGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKT--YANVIERTPSSGRK 1127

Query: 92   LKIGVCPSCKNGDQISNMKLPYACKLLIQELQSMNI 127
            ++   C  C + D +  + +PY  KLL QEL SM I
Sbjct: 1128 IRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGI 1163


>AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nuclear RNA
            polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172
          Length = 1172

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 11/96 (11%)

Query: 41   FSGLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLLGYYNY---------K 91
            F G++ GEMERDCLIA+GAS  + ERL   SD  ++ +CR C    Y N          K
Sbjct: 1070 FGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKT--YANVIERTPSSGRK 1127

Query: 92   LKIGVCPSCKNGDQISNMKLPYACKLLIQELQSMNI 127
            ++   C  C + D +  + +PY  KLL QEL SM I
Sbjct: 1128 IRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGI 1163


>AT1G29940.1 | Symbols: NRPA2 | nuclear RNA polymerase A2 |
            chr1:10479322-10486670 REVERSE LENGTH=1178
          Length = 1178

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 56/112 (50%), Gaps = 19/112 (16%)

Query: 43   GLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLL---GYYNYKLK-----I 94
            G+R GEMERD L+A+GAS L+ +RL  SSD     VC  CG L      N + K     I
Sbjct: 1061 GIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEI 1120

Query: 95   G-----------VCPSCKNGDQISNMKLPYACKLLIQELQSMNIVPRLKLAD 135
            G            C SCK    +  + +PY  + L  EL SMNI   L+L+D
Sbjct: 1121 GKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1172