Miyakogusa Predicted Gene

Lj0g3v0205999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205999.1 tr|B9GMR8|B9GMR8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_708815 PE=4 SV=1,32.32,5e-19,BRCT
domain,BRCT domain; BRCT,BRCT domain; no description,NULL; seg,NULL;
breast cancer carboxy-term,CUFF.13168.1
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58003.1 | Symbols: CPL4 | C-terminal domain phosphatase-like...   142   1e-34
AT2G33540.1 | Symbols: CPL3, ATCPL3 | C-terminal domain phosphat...   105   3e-23
AT3G19600.1 | Symbols:  | Haloacid dehalogenase-like hydrolase (...    48   4e-06

>AT5G58003.1 | Symbols: CPL4 | C-terminal domain phosphatase-like 4
           | chr5:23480066-23481924 FORWARD LENGTH=440
          Length = 440

 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 6/169 (3%)

Query: 1   MIKRYHYFASDLKHFGFSCKSLAEMKVDEQETTGVLARMLNVLKQVHFTFFDKLEEDYVD 60
           +I+RYH+F+S  + F    KSL+E+K DE E  G LA +L VLKQ H  FF+ ++E   +
Sbjct: 268 VIERYHFFSSSCRQFDHRYKSLSELKSDESEPDGALATVLKVLKQAHALFFENVDEGISN 327

Query: 61  RDVRKVVSSLRSEVLSGCVIVFFR-----TKPAPLPFLQEIAMQMGATCMEKLDPSVTHV 115
           RDVR ++  +R E+L GC IVF R      KP   P L ++A ++GATC  ++D SVTHV
Sbjct: 328 RDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHP-LWKMAEELGATCATEVDASVTHV 386

Query: 116 VSTKARTEKFQWAEKENKFLVHPQWIYDAYCFWQKPPETNYICKNIDRE 164
           V+    TEK +WA +E K++VH  WI  A   W K PE N+  + + ++
Sbjct: 387 VAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENFGLEQLKKQ 435


>AT2G33540.1 | Symbols: CPL3, ATCPL3 | C-terminal domain
            phosphatase-like 3 | chr2:14204081-14208797 REVERSE
            LENGTH=1241
          Length = 1241

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 7/160 (4%)

Query: 2    IKRYHYFASDLKHFGFSCKSLAEMKVDEQETTGVLARMLNVLKQVHFTFFDKLEEDYVDR 61
            ++RY YF    + FG    SL E+  DE    G LA  L V++++H  FF     D VD 
Sbjct: 1080 VERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVD- 1138

Query: 62   DVRKVVSSLRSEVLSGCVIVFFRTKPAP-----LPFLQEIAMQMGATCMEKLDPSVTHVV 116
             VR +++S + ++L+GC IVF R  P       L  L + A Q GA C  ++D  VTHVV
Sbjct: 1139 -VRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVV 1197

Query: 117  STKARTEKFQWAEKENKFLVHPQWIYDAYCFWQKPPETNY 156
            +    T+K  WA    +F+VHP W+  +   +Q+  E  Y
Sbjct: 1198 TNSLGTDKVNWALTRGRFVVHPGWVEASAFLYQRANENLY 1237


>AT3G19600.1 | Symbols:  | Haloacid dehalogenase-like hydrolase
           (HAD) superfamily protein | chr3:6810710-6811742 REVERSE
           LENGTH=302
          Length = 302

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 1   MIKRYHYFASDLKHFGFSCKSLAEMKVDEQETTGVLARMLNVLKQVHFTFFDKLEEDYVD 60
           +I RY+YF S  +      K  +E K DE E  G LA +L +LK +H  FF K+EE+   
Sbjct: 234 LIGRYNYFRSQSR----VLKPHSEEKTDESENNGGLANVLKLLKGIHHKFF-KVEEEVES 288

Query: 61  RDVRKVVSS 69
           +DVR +++S
Sbjct: 289 QDVRDILAS 297