Miyakogusa Predicted Gene

Lj0g3v0205889.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205889.1 tr|I7MPD6|I7MPD6_COXBE 30S ribosomal protein S6
OS=Coxiella burnetii 'MSU Goat Q177' GN=rpsF PE=3
SV,48.48,8e-19,Ribosomal protein S6,Ribosomal protein S6;
Ribosomal_S6,Ribosomal protein S6, plastid/chloroplast; S,CUFF.13156.1
         (269 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17170.1 | Symbols: RFC3 | Translation elongation  factor EF1...   265   3e-71

>AT3G17170.1 | Symbols: RFC3 | Translation elongation  factor
           EF1B/ribosomal protein S6 family protein |
           chr3:5853186-5854853 REVERSE LENGTH=314
          Length = 314

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 118/173 (68%), Positives = 152/173 (87%)

Query: 72  EDHHSFVSKPDESAGFFPEAVLLKKKIVEEDGEFLPEFEDAEERKLFESLMLEMDSDLNV 131
           +D+H+F ++PDE+ G FPE++LLK+K ++E+G+ LPEF DAEE++L++ L L++ SDLN 
Sbjct: 58  DDNHNFSARPDEATGPFPESILLKEKKIDEEGDLLPEFADAEEKELYQFLDLQLQSDLNE 117

Query: 132 ELLRHYEIVYLIHEKHEEEVAAVNEKIQDFLREKKGTVWRFSDWGMRTLAYKIKKANKAH 191
           E +RHYE+VYLIHEKH EEV ++N+K+QD+L+EKKG VWRFSDWGMR LAYKI+KA  AH
Sbjct: 118 ERMRHYEVVYLIHEKHAEEVESINQKVQDYLKEKKGKVWRFSDWGMRRLAYKIQKAENAH 177

Query: 192 YILMNIEMDAKYINEFKTLLDQDERVIRHLVVKRDEAITEDCPPPPEFHTLGA 244
           YILMN E++AKY+NEFK LLD DERVIRHLV+KRDEAITEDCPPPPEFH++ A
Sbjct: 178 YILMNFEIEAKYLNEFKGLLDSDERVIRHLVMKRDEAITEDCPPPPEFHSVRA 230