Miyakogusa Predicted Gene

Lj0g3v0205819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205819.1 tr|B9ILT3|B9ILT3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_669375 PE=4
SV=1,34.65,0.00000000000006,seg,NULL; coiled-coil,NULL; SUBFAMILY NOT
NAMED,NULL; GOLGIN-84,NULL,CUFF.13153.1
         (452 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19950.1 | Symbols: GC1 | golgin candidate 1 | chr2:8616341-8...   304   9e-83
AT2G19950.2 | Symbols: GC1 | golgin candidate 1 | chr2:8616341-8...    58   2e-08

>AT2G19950.1 | Symbols: GC1 | golgin candidate 1 |
           chr2:8616341-8621219 REVERSE LENGTH=707
          Length = 707

 Score =  304 bits (778), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 183/206 (88%)

Query: 239 NQKSHKDHKTDISPKKVQDQLDEAQGLLKTTKSTGQSKEARLARVCAGLSSRLQEYKSEN 298
           N K  +D + D +  K+QDQL+EAQGLLK T STGQSKEARLARVCAGLSSRLQE K+EN
Sbjct: 244 NLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEARLARVCAGLSSRLQEIKAEN 303

Query: 299 AQLEELLTAERELSKSYEASIKQLQKNLSESKREVTRVESNMADALSAKNAEIEALLSSM 358
           AQLEELLTAE+EL+KSYEASI+ LQK+LS +K EVT+VES+M +AL+AKN+EIE L+S+M
Sbjct: 304 AQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVESSMVEALAAKNSEIETLVSAM 363

Query: 359 EAVKKQAALSEGNLASMQANMESMMRNRELTETRMMQALREELASTERRAEEERVAHNAT 418
           +A+K QAAL+EG L+S+Q +MES+MRNREL ETRMMQALREELA+TERRAEEER AHNAT
Sbjct: 364 DALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALREELATTERRAEEERSAHNAT 423

Query: 419 KMAAMERQVELEHRAVESSTALARIQ 444
           KMAAMER+ ELEHRAV++STAL RIQ
Sbjct: 424 KMAAMERERELEHRAVDASTALVRIQ 449


>AT2G19950.2 | Symbols: GC1 | golgin candidate 1 |
           chr2:8616341-8621219 REVERSE LENGTH=710
          Length = 710

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 63/124 (50%), Gaps = 21/124 (16%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVATDL-EDQSDSKSPAXXXXXXXXXXKGTKRKPKTKNGQ 59
           MASWLKAAEDLFEVVDRRAK V  DL E+Q+D + PA            +K+K + K  +
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 60  SNSPSITTDATKEDSGFPAALVDVTTPSDKVDLVAENDGDASVSTDQPKKEQQTTDATSP 119
             S S   D++ + SG P        PS            +SVSTD+       T ++ P
Sbjct: 61  EES-SNKRDSSGDQSG-PGVSQSEVPPS-----------KSSVSTDE-------TSSSGP 100

Query: 120 ILGT 123
           +L T
Sbjct: 101 VLLT 104