Miyakogusa Predicted Gene

Lj0g3v0205479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205479.1 Non Chatacterized Hit- tr|J3M6T5|J3M6T5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G2,43.32,0.00000000000001,seg,NULL,CUFF.13128.1
         (328 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26230.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   107   2e-23

>AT5G26230.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 1807 Blast hits to 1807 proteins in
           277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:9173517-9174542
           REVERSE LENGTH=341
          Length = 341

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 94/181 (51%), Gaps = 35/181 (19%)

Query: 26  ALCPADELFYKGQLLPLHLSPRISMVRX----XXXXXXXXXXXXXXXXXXPRDXXXXXXX 81
           +LCPADELFYKGQLLPL LSPR+S+VR                        RD       
Sbjct: 40  SLCPADELFYKGQLLPLQLSPRLSLVRTLGSSTSSSDYTSSSSSSVATSAARDSTESNSS 99

Query: 82  XXXDLAIFP--------DCDSSRPSSVAEDDELKRLHIHNSNDNNPLFQPNIKKTHKY-F 132
                A FP         CDSSRPSSV +D++               F+P   K+    F
Sbjct: 100 TDST-ASFPLLHPPPLDCCDSSRPSSVTDDEDF-------------FFKPPKNKSSSGGF 145

Query: 133 SLSRFSSVFRKE--------NVAKTRDPENATGSSVKRMSATAKEVIRKYLKKVKPLYDK 184
           SLSRFSSVF+K+        + + +     A  SSVKRMS+TAKEVIRKY+KKVKPLY+K
Sbjct: 146 SLSRFSSVFKKDPKTNLHHHSSSSSTATTAAAPSSVKRMSSTAKEVIRKYMKKVKPLYEK 205

Query: 185 L 185
           L
Sbjct: 206 L 206