Miyakogusa Predicted Gene

Lj0g3v0205459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205459.1 tr|G7K2B8|G7K2B8_MEDTR Chloride channel protein
CLC-d OS=Medicago truncatula GN=MTR_5g005990 PE=4
SV,92.49,0,CLCHANNEL,Chloride channel, voltage gated;
CLCHANNELPLT,Chloride channel ClC-plant; Clc chloride cha,CUFF.13132.1
         (412 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26240.1 | Symbols: CLC-D, ATCLC-D | chloride channel D | chr...   602   e-172
AT5G40890.1 | Symbols: ATCLC-A, CLC-A, CLCA, ATCLCA | chloride c...   294   7e-80
AT3G27170.1 | Symbols: CLC-B, ATCLC-B | chloride channel B | chr...   292   3e-79
AT5G49890.1 | Symbols: CLC-C, ATCLC-C | chloride channel C | chr...   289   2e-78
AT5G33280.1 | Symbols:  | Voltage-gated chloride channel family ...   287   1e-77
AT5G40890.2 | Symbols: ATCLC-A, CLC-A, CLCA, ATCLCA | chloride c...   238   4e-63

>AT5G26240.1 | Symbols: CLC-D, ATCLC-D | chloride channel D |
           chr5:9189622-9194347 FORWARD LENGTH=792
          Length = 792

 Score =  602 bits (1553), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 308/411 (74%), Positives = 333/411 (81%), Gaps = 1/411 (0%)

Query: 1   MLSNHIQNGIETARLVWSRIPNSEDSQXXXXXXXXXXXXXXXSGAESLDYEVIENFAYRE 60
           MLSNH+QNGIE+  L+WSR+P S+D+                 G  SLDYEVIEN+AYRE
Sbjct: 1   MLSNHLQNGIESDNLLWSRVPESDDTSTDDITLLNSHRDGD-GGVNSLDYEVIENYAYRE 59

Query: 61  EQAQRGKLFVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKFSVTFNIIQKSYVA 120
           EQA RGKL+V Y + VKWFF+LLIGI TGLAAVFIN+SVENFAGWKF++TF IIQKSY A
Sbjct: 60  EQAHRGKLYVGYYVAVKWFFSLLIGIGTGLAAVFINLSVENFAGWKFALTFAIIQKSYFA 119

Query: 121 GFIVYVLINLALVASSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGS 180
           GFIVY+LINL LV SS YI+TQFAPAAAGSGIPEIKGYLNG+DI G LLFRTLIGKIFGS
Sbjct: 120 GFIVYLLINLVLVFSSAYIITQFAPAAAGSGIPEIKGYLNGIDIPGTLLFRTLIGKIFGS 179

Query: 181 IGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNVFKSDRDRRDLXXXXXX 240
           IGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRW  +FKSDRDRRDL      
Sbjct: 180 IGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWPQLFKSDRDRRDLVTCGCA 239

Query: 241 XXXXXXXXXXXXXXLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFG 300
                         LFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSG CGHFG
Sbjct: 240 AGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGICGHFG 299

Query: 301 SGGFIIWDISDGQEDYSFAELLPMXXXXXXXXXXXXXFNQLTLYITTWRRNHLHKKGSRV 360
            GGFIIWD+SDGQ+DY F ELLPM             FNQLTLY+T+WRRN LHKKG+RV
Sbjct: 300 GGGFIIWDVSDGQDDYYFKELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNSLHKKGNRV 359

Query: 361 KIVEACIVSLLTSVISFGLPLLRKCSPCPESDPSSGIECPRPPGMYGNYVN 411
           KI+EACI+S +TS ISFGLPLLRKCSPCPES P SGIECPRPPGMYGNYVN
Sbjct: 360 KIIEACIISCITSAISFGLPLLRKCSPCPESVPDSGIECPRPPGMYGNYVN 410


>AT5G40890.1 | Symbols: ATCLC-A, CLC-A, CLCA, ATCLCA | chloride
           channel A | chr5:16381645-16384999 REVERSE LENGTH=775
          Length = 775

 Score =  294 bits (753), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 163/368 (44%), Positives = 215/368 (58%), Gaps = 6/368 (1%)

Query: 43  SGAESLDYEVIENFAYREEQAQRGKLFVSYLLVVKWFFALLIGICTGLAAVFINISVENF 102
           S  ESLDYE+ EN  ++ +   R K  V   + +KW  A L+G+ TGL A  IN++VEN 
Sbjct: 52  SHIESLDYEINENDLFKHDWRSRSKAQVFQYIFLKWTLACLVGLFTGLIATLINLAVENI 111

Query: 103 AGWKF-SVTFNIIQKSYVAGFIVYVLINLALVASSVYIVTQFAPAAAGSGIPEIKGYLNG 161
           AG+K  +V + I Q  +  G +V+   NL L   +  +V  FAP AAG GIPEIK YLNG
Sbjct: 112 AGYKLLAVGYYIAQDRFWTGLMVFTGANLGLTLVATVLVVYFAPTAAGPGIPEIKAYLNG 171

Query: 162 VDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRW 221
           +D   +  F T++ KI GSIG+V  GL LGKEGPLVH G+CIASLLGQGG   + +  RW
Sbjct: 172 IDTPNMFGFTTMMVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRW 231

Query: 222 FNVFKSDRDRRDLXXXXXXXXXXXXXXXXXXXXLFALEEVTSWWRSQLMWRVFFTSAIVA 281
              F +DRDRRDL                    LFALEEV +WWRS L+WR FF++A+V 
Sbjct: 232 LRYFNNDRDRRDLITCGSASGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVV 291

Query: 282 VVVRTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMXXXXXXXXXXXXXFNQL 341
           VV+R  +  C SGKCG FGSGG I++D+S  +  Y  A+++P+             +N L
Sbjct: 292 VVLRAFIEICNSGKCGLFGSGGLIMFDVSHVEVRYHAADIIPVTLIGVFGGILGSLYNHL 351

Query: 342 TLYITTWRRNHLHKKGSRVKIVEACIVSLLTSVISFGLPLLRKCSPCPESDPSSGIECPR 401
            L+      N +++KG   K++ +  VSL TSV  FGLP L +C PC   DPS    CP 
Sbjct: 352 -LHKVLRLYNLINQKGKIHKVLLSLGVSLFTSVCLFGLPFLAECKPC---DPSIDEICPT 407

Query: 402 PPGMYGNY 409
             G  GN+
Sbjct: 408 -NGRSGNF 414


>AT3G27170.1 | Symbols: CLC-B, ATCLC-B | chloride channel B |
           chr3:10024147-10026921 FORWARD LENGTH=780
          Length = 780

 Score =  292 bits (747), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 163/368 (44%), Positives = 213/368 (57%), Gaps = 6/368 (1%)

Query: 43  SGAESLDYEVIENFAYREEQAQRGKLFVSYLLVVKWFFALLIGICTGLAAVFINISVENF 102
           S  ESLDYE+ EN  ++ +  +R K  V   + +KW  A L+G+ TGL A  IN++VEN 
Sbjct: 51  SHIESLDYEINENDLFKHDWRKRSKAQVLQYVFLKWTLACLVGLFTGLIATLINLAVENI 110

Query: 103 AGWKF-SVTFNIIQKSYVAGFIVYVLINLALVASSVYIVTQFAPAAAGSGIPEIKGYLNG 161
           AG+K  +V   + Q+ YV G +V V  NL L   +  +   FAP AAG GIPEIK YLNG
Sbjct: 111 AGYKLLAVGHFLTQERYVTGLMVLVGANLGLTLVASVLCVCFAPTAAGPGIPEIKAYLNG 170

Query: 162 VDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRW 221
           VD   +    T+I KI GSIG+V  GL LGKEGPLVH G+CIASLLGQGG+  + +  RW
Sbjct: 171 VDTPNMFGATTMIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNHRIKWRW 230

Query: 222 FNVFKSDRDRRDLXXXXXXXXXXXXXXXXXXXXLFALEEVTSWWRSQLMWRVFFTSAIVA 281
              F +DRDRRDL                    LFALEEV +WWRS L+WR FF++A+V 
Sbjct: 231 LRYFNNDRDRRDLITCGSAAGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVV 290

Query: 282 VVVRTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMXXXXXXXXXXXXXFNQL 341
           VV+R  +  C SGKCG FG GG I++D+S     Y   +++P+             +N L
Sbjct: 291 VVLREFIEICNSGKCGLFGKGGLIMFDVSHVTYTYHVTDIIPVMLIGVIGGILGSLYNHL 350

Query: 342 TLYITTWRRNHLHKKGSRVKIVEACIVSLLTSVISFGLPLLRKCSPCPESDPSSGIECPR 401
            L+      N +++KG   K++ +  VSL TSV  +GLP L KC PC   DPS    CP 
Sbjct: 351 -LHKVLRLYNLINEKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPC---DPSIDEICPT 406

Query: 402 PPGMYGNY 409
             G  GN+
Sbjct: 407 -NGRSGNF 413


>AT5G49890.1 | Symbols: CLC-C, ATCLC-C | chloride channel C |
           chr5:20288489-20292143 REVERSE LENGTH=779
          Length = 779

 Score =  289 bits (740), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 153/347 (44%), Positives = 209/347 (60%), Gaps = 6/347 (1%)

Query: 46  ESLDYEVIENFAYREEQAQRGKLFVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGW 105
           ESLDYE+ EN  ++++   R K+ +     +KW  A LIG+ TGL     N+ VEN AG+
Sbjct: 64  ESLDYEIFENDFFKQDWRSRKKIEILQYTFLKWALAFLIGLATGLVGFLNNLGVENIAGF 123

Query: 106 KFSVTFNI-IQKSYVAGFIVYVLINLALVASSVYIVTQFAPAAAGSGIPEIKGYLNGVDI 164
           K  +  N+ +++ Y   F  +   NL L  ++  +    APAAAGSGIPE+K YLNG+D 
Sbjct: 124 KLLLIGNLMLKEKYFQAFFAFAGCNLILATAAASLCAFIAPAAAGSGIPEVKAYLNGIDA 183

Query: 165 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNV 224
           + IL   TL  KIFGSI  V  G  +GKEGP+VHTGACIA+LLGQGGS KY L  +W   
Sbjct: 184 YSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYRLTWKWLRF 243

Query: 225 FKSDRDRRDLXXXXXXXXXXXXXXXXXXXXLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 284
           FK+DRDRRDL                    LFALEE  SWWR+ L+WR FFT+A+VAVV+
Sbjct: 244 FKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRNALLWRTFFTTAVVAVVL 303

Query: 285 RTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMXXXXXXXXXXXXXFNQLTLY 344
           R+ + +C+SG+CG FG GG I++D++ G   YS  +LL +             +N L   
Sbjct: 304 RSLIEFCRSGRCGLFGKGGLIMFDVNSGPVLYSTPDLLAIVFLGVIGGVLGSLYNYL--- 360

Query: 345 ITTWRRNH--LHKKGSRVKIVEACIVSLLTSVISFGLPLLRKCSPCP 389
           +    R +  +++KG R KI+    VS+L+S  +FGLP L +C+PCP
Sbjct: 361 VDKVLRTYSIINEKGPRFKIMLVMAVSILSSCCAFGLPWLSQCTPCP 407


>AT5G33280.1 | Symbols:  | Voltage-gated chloride channel family
           protein | chr5:12549280-12552305 FORWARD LENGTH=765
          Length = 765

 Score =  287 bits (734), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/375 (42%), Positives = 215/375 (57%), Gaps = 15/375 (4%)

Query: 46  ESLDYEVIENFAYREEQAQRGKLFVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGW 105
           ESLDYE+ EN  ++++   R K+ +   + +KW     IGI   L     N++VEN AG 
Sbjct: 39  ESLDYEIAENDFFKQDWRGRSKVEIFQYVFMKWLLCFCIGIIVSLIGFANNLAVENLAGV 98

Query: 106 KFSVTFNI-IQKSYVAGFIVYVLINLALVASSVYIVTQFAPAAAGSGIPEIKGYLNGVDI 164
           KF VT N+ I   +  GF+V+ + NL L   +  I    APAAAGSGIPE+K YLNGVD 
Sbjct: 99  KFVVTSNMMIAGRFAMGFVVFSVTNLILTLFASVITAFVAPAAAGSGIPEVKAYLNGVDA 158

Query: 165 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNV 224
             I   RTLI KI G+I +V   L +GK GP+VHTGAC+AS+LGQGGS +Y L  RW   
Sbjct: 159 PEIFSLRTLIIKIIGNISAVSASLLIGKAGPMVHTGACVASILGQGGSKRYRLTWRWLRF 218

Query: 225 FKSDRDRRDLXXXXXXXXXXXXXXXXXXXXLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 284
           FK+DRDRRDL                    LFALEE++SWWRS L+WR+FF++A+VA+V+
Sbjct: 219 FKNDRDRRDLVTCGAAAGIAASFRAPVGGVLFALEEMSSWWRSALLWRIFFSTAVVAIVL 278

Query: 285 RTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMXXXXXXXXXXXXXFNQLTLY 344
           R  +  C SGKCG FG GG I++D+      Y   ++LP+             +N L L 
Sbjct: 279 RALIDVCLSGKCGLFGKGGLIMFDVYSENASYHLGDVLPVLLLGVVGGILGSLYNFL-LD 337

Query: 345 ITTWRRNHLHKKGSRVKIVEACIVSLLTSVISFGLPLLRKCSPCP----ESDPSSG---- 396
                 N++++KG   KI+ AC +S+ TS + FGLP L  C PCP    E  P+ G    
Sbjct: 338 KVLRAYNYIYEKGVTWKILLACAISIFTSCLLFGLPFLASCQPCPVDALEECPTIGRSGN 397

Query: 397 ---IECPRPPGMYGN 408
               +C  PPG Y +
Sbjct: 398 FKKYQC--PPGHYND 410


>AT5G40890.2 | Symbols: ATCLC-A, CLC-A, CLCA, ATCLCA | chloride
           channel A | chr5:16381645-16383821 REVERSE LENGTH=643
          Length = 643

 Score =  238 bits (608), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 130/287 (45%), Positives = 168/287 (58%), Gaps = 5/287 (1%)

Query: 123 IVYVLINLALVASSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIG 182
           +V+   NL L   +  +V  FAP AAG GIPEIK YLNG+D   +  F T++ KI GSIG
Sbjct: 1   MVFTGANLGLTLVATVLVVYFAPTAAGPGIPEIKAYLNGIDTPNMFGFTTMMVKIVGSIG 60

Query: 183 SVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNVFKSDRDRRDLXXXXXXXX 242
           +V  GL LGKEGPLVH G+CIASLLGQGG   + +  RW   F +DRDRRDL        
Sbjct: 61  AVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFNNDRDRRDLITCGSASG 120

Query: 243 XXXXXXXXXXXXLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSG 302
                       LFALEEV +WWRS L+WR FF++A+V VV+R  +  C SGKCG FGSG
Sbjct: 121 VCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGSG 180

Query: 303 GFIIWDISDGQEDYSFAELLPMXXXXXXXXXXXXXFNQLTLYITTWRRNHLHKKGSRVKI 362
           G I++D+S  +  Y  A+++P+             +N L L+      N +++KG   K+
Sbjct: 181 GLIMFDVSHVEVRYHAADIIPVTLIGVFGGILGSLYNHL-LHKVLRLYNLINQKGKIHKV 239

Query: 363 VEACIVSLLTSVISFGLPLLRKCSPCPESDPSSGIECPRPPGMYGNY 409
           + +  VSL TSV  FGLP L +C PC   DPS    CP   G  GN+
Sbjct: 240 LLSLGVSLFTSVCLFGLPFLAECKPC---DPSIDEICPT-NGRSGNF 282