Miyakogusa Predicted Gene
- Lj0g3v0205409.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0205409.1 Non Chatacterized Hit- tr|I1KJ49|I1KJ49_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41272
PE,44.35,2e-18,Zinc finger domain,Zinc finger, RanBP2-type; seg,NULL;
zf-RanBP,Zinc finger, RanBP2-type; ZF_RANBP2_,CUFF.13118.1
(509 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G70650.1 | Symbols: | Ran BP2/NZF zinc finger-like superfami... 394 e-109
AT1G70650.2 | Symbols: | Ran BP2/NZF zinc finger-like superfami... 393 e-109
AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family prote... 226 2e-59
AT1G55040.1 | Symbols: | zinc finger (Ran-binding) family prote... 218 5e-57
AT5G17790.1 | Symbols: VAR3 | zinc finger (Ran-binding) family p... 130 2e-30
AT1G53460.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 73 4e-13
>AT1G70650.1 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr1:26638158-26640126 FORWARD LENGTH=466
Length = 466
Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/311 (61%), Positives = 229/311 (73%), Gaps = 8/311 (2%)
Query: 60 SHPWPEWVGLMECLLKNGYFHAEGNPFKNADIGAKEANVIRTACLNFGRDHFDLVRVLSR 119
SHPWPEW+ LM L K GYF P + +KE+N IRTACLNF R F LVR LS+
Sbjct: 43 SHPWPEWLDLMGMLAKKGYFEESLIPL----MSSKESNHIRTACLNFARHRFTLVRNLSK 98
Query: 120 KDIASTVVFGCPSLDRKVINSGKRLRAYLGIDEGNVCSSCNLRGDCERAFVNAREDEGGR 179
KDI GCPS DRKV+NSGKRLRAY+GIDEGNVC SCNLRG CERA+ AR+DEG R
Sbjct: 99 KDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAYAQARDDEGAR 158
Query: 180 TVDVMRIILTYGLDSIIASVENKPCLKKQVTESVRRLLKEIVDHSNEDKNSNFPDTTEAV 239
T+DVMR++LTYGLDSI +VEN+ C K V +SVR+LL+E V +S D S TE
Sbjct: 159 TIDVMRLLLTYGLDSISPTVENRACQTKLVEDSVRKLLRESVAYSLTDFESA---ETETA 215
Query: 240 NEQVHPNLQAKGKKNVPMKQGDWICPKCNFLNFARNIRCLHCDCFCEEKIKQLKEDN-NH 298
+++ PN Q +++ + GDW C +C FLNFA+NIRCL CD F EE++KQLKE+ +H
Sbjct: 216 GDELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKNIRCLRCDVFSEERLKQLKEEQKDH 275
Query: 299 LPLKKGDWICNKCNFLNFARNTRCLLCKENPSNRQINPGEWECDSCNYINFRRNMACLKC 358
LPLKKGDWIC CNFLNF++NTRCL CK+ P+ RQINPGEWEC+SCNYINFRRN CLKC
Sbjct: 276 LPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQINPGEWECESCNYINFRRNSICLKC 335
Query: 359 DHRRPKMSNAS 369
DH+R K +N +
Sbjct: 336 DHKRQKAANVT 346
>AT1G70650.2 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr1:26638158-26641949 FORWARD LENGTH=595
Length = 595
Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/311 (61%), Positives = 229/311 (73%), Gaps = 8/311 (2%)
Query: 60 SHPWPEWVGLMECLLKNGYFHAEGNPFKNADIGAKEANVIRTACLNFGRDHFDLVRVLSR 119
SHPWPEW+ LM L K GYF P + +KE+N IRTACLNF R F LVR LS+
Sbjct: 43 SHPWPEWLDLMGMLAKKGYFEESLIPL----MSSKESNHIRTACLNFARHRFTLVRNLSK 98
Query: 120 KDIASTVVFGCPSLDRKVINSGKRLRAYLGIDEGNVCSSCNLRGDCERAFVNAREDEGGR 179
KDI GCPS DRKV+NSGKRLRAY+GIDEGNVC SCNLRG CERA+ AR+DEG R
Sbjct: 99 KDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAYAQARDDEGAR 158
Query: 180 TVDVMRIILTYGLDSIIASVENKPCLKKQVTESVRRLLKEIVDHSNEDKNSNFPDTTEAV 239
T+DVMR++LTYGLDSI +VEN+ C K V +SVR+LL+E V +S D S TE
Sbjct: 159 TIDVMRLLLTYGLDSISPTVENRACQTKLVEDSVRKLLRESVAYSLTDFESA---ETETA 215
Query: 240 NEQVHPNLQAKGKKNVPMKQGDWICPKCNFLNFARNIRCLHCDCFCEEKIKQLKEDN-NH 298
+++ PN Q +++ + GDW C +C FLNFA+NIRCL CD F EE++KQLKE+ +H
Sbjct: 216 GDELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKNIRCLRCDVFSEERLKQLKEEQKDH 275
Query: 299 LPLKKGDWICNKCNFLNFARNTRCLLCKENPSNRQINPGEWECDSCNYINFRRNMACLKC 358
LPLKKGDWIC CNFLNF++NTRCL CK+ P+ RQINPGEWEC+SCNYINFRRN CLKC
Sbjct: 276 LPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQINPGEWECESCNYINFRRNSICLKC 335
Query: 359 DHRRPKMSNAS 369
DH+R K +N +
Sbjct: 336 DHKRQKAANVT 346
>AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr1:17955455-17957661 REVERSE LENGTH=455
Length = 455
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/386 (35%), Positives = 195/386 (50%), Gaps = 83/386 (21%)
Query: 61 HPWPEWVGLMECLLKNGYFHAEGNPFKNADIGAKEANVIRTACLNFGRDHFDLVRVLSRK 120
HPWPEW+ ++ L GYF + D +E +++ ACL+F RD +D++R LS
Sbjct: 60 HPWPEWITFVDRLKTKGYFTKDTE----DDTVYQEMILVKDACLSFARDRYDVLRSLSSG 115
Query: 121 DIASTVVFGCPSLDRKVINSGKRLRAYLGIDEGNVCSSCNLRGDCERAFVNAREDEG-GR 179
D+ + V GCP+L RK +NS KR+RA++ ++EG+VC SC+LR C+RA+V ++ E R
Sbjct: 116 DVQALVERGCPNLFRKTVNSSKRIRAHVKLNEGDVCGSCDLRSSCDRAYVILKDTEADAR 175
Query: 180 TVDVMRIILTYGLDSIIASVENKPCLKKQVTESVRRLLKEIVDHSNE----------DKN 229
TVDVMR++L LDSI+ S P K+ V ES RRLL E+V+ S + K
Sbjct: 176 TVDVMRLLLFNALDSIVISRGEVPPGKELVHESARRLLLELVEFSEKPLIPALPKPSSKE 235
Query: 230 SNFPDTTEAV---NEQVHPNLQAKGK--------------------------------KN 254
S+ P A N++ + K + ++
Sbjct: 236 SSLPSKERAFKSRNDEPSQRVAFKSRNDDPSQRVAFKSRNDEPSHRVAFKSRNDESSQRD 295
Query: 255 VPMKQGDWICPKCNFLNFARNIRCLHC----------------DCFCEE----------- 287
P+ DW CPKC+F+NFARN RC C D C E
Sbjct: 296 RPLYSADWACPKCDFVNFARNERCRECNEVADRRPVAAVVKEGDWLCPECSFLNFTRNQS 355
Query: 288 ----KIKQLKEDN--NHLPLKKGDWICNKCNFLNFARNTRCLLCKENPSNRQINPGEWEC 341
K K K+ + N + +KKGDW C C ++NFA N +C C+E PG+WEC
Sbjct: 356 CLKCKAKGPKKTSMVNIVEMKKGDWNCTGCGYMNFASNKQCRECREQRHKTLAEPGDWEC 415
Query: 342 DSCNYINFRRNMACLKCDHRRPKMSN 367
SC+++NFRRN AC KC+ +RP +N
Sbjct: 416 PSCDFVNFRRNDACKKCECKRPSQAN 441
>AT1G55040.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr1:20534895-20538901 FORWARD LENGTH=849
Length = 849
Score = 218 bits (556), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 135/353 (38%), Positives = 188/353 (53%), Gaps = 63/353 (17%)
Query: 56 AVQVSHPWPEWVGLMECLLKNGYF------------HAEGNPFKNADIGAKE-------- 95
+++ HPWPEW+ LME L+K YF ++ G + +G E
Sbjct: 142 VIELVHPWPEWMELMERLVKQNYFDHRRERDDDDMVNSLGIDVSSVGLGEDENVGVALFQ 201
Query: 96 -ANVIRTACLNFGRDHFDLVRVLSRKDIASTVVFGCPSLDRKVINSGKRLRAYLGIDEGN 154
++ AC NFG+D FD++R LSR DI V GCP+ DRKV+ SGK LR + +DEG+
Sbjct: 202 DFRAVQNACSNFGKDRFDILRSLSRNDIQILVGHGCPATDRKVVFSGKLLRKRVHLDEGD 261
Query: 155 VCSSCNLRGDCERAFVNAREDEGGRTVDVMRIILTYGLDSIIASVENKPCLKKQVTESV- 213
VCSSC+LR CE+AF+ +++ RT+D+MRI+ TYG D + +V NK LKK+ +SV
Sbjct: 262 VCSSCSLRNSCEKAFLLTNKEDEARTIDLMRILFTYGFDPLNGTVANKSLLKKKSVKSVV 321
Query: 214 RRLLKEIVDHSNEDKNSNFPDTTEAVNEQVHPNLQAKGKKNVPMK-QGDWICPKCNFLNF 272
R+LL EIV K S P + PNL K P K + PK
Sbjct: 322 RKLLHEIV------KLSAVP---------IDPNLTPPVIKRAPPKVKQPPPTPK------ 360
Query: 273 ARNIRCLHCDCFCEEKIKQLKEDNNHLPLKKGDWICNKCNFLNFARNTRCLLCKENPSNR 332
+++ D+ + +KKGDW+C KC+F+NFA+NT CL C R
Sbjct: 361 -----------------RRVGRDD--VEMKKGDWLCPKCDFMNFAKNTICLQCDAKRPKR 401
Query: 333 QINPGEWECDSCNYINFRRNMACLKCDHRRPKMSNASNTPQQEQEVKNNHKNR 385
Q+ PGEWEC CN++N+RRNMAC CD +RP + N PQ+ +R
Sbjct: 402 QLLPGEWECPECNFLNYRRNMACFHCDCKRPADAILENKPQETYRFTEAQTDR 454
>AT5G17790.1 | Symbols: VAR3 | zinc finger (Ran-binding) family
protein | chr5:5869810-5872671 REVERSE LENGTH=758
Length = 758
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 151/331 (45%), Gaps = 70/331 (21%)
Query: 64 PEWVGLMECLLKNGYFHAEGN--PFKNADIGAKEANVIRTA--CLNFGRDHFDLVRVLSR 119
PEW L++ L K GYF G+ ++ ++R A CL R+ +L+ +LSR
Sbjct: 93 PEWTELLQSLSKAGYFSDSGSISGLESEFFPGFPDELLRPALACLALARERPELLEMLSR 152
Query: 120 KDIASTVVFGCPSLDRKVINSGKRLRAYLGIDEGNVCSSCNLRGDCERAFVNAREDEGGR 179
+D+ V G P L + +S KR+ YL + ++ E
Sbjct: 153 RDVEVLVENGKPFLFKTGPDSLKRMSLYLRSGLQGIGKLMDM--------------EKAS 198
Query: 180 TVDVMRIILTYGLDSIIASVENKPCLKKQVTESVRRLLKEIVDHSNEDKNSNFPDTTEAV 239
TVD+MR+IL+Y +D + +S E+K K+ + SVR LL +I S SN DT +
Sbjct: 199 TVDLMRLILSYVVD-VASSEESKQHNKEIMESSVRSLLSQIAKMSLRPPESNVHDTMQ-- 255
Query: 240 NEQVHPNLQAKGKKNVPMKQGDWICPKCNFLNFARNIRCLHCDCFCEEKIKQLKEDNNHL 299
+ + + + ++ N++
Sbjct: 256 ------------------------------------------NQYSDRDGQGVRSFQNNV 273
Query: 300 PLKKGDWICNKCNFLNFARNTRCLLCKENPSNRQINPGEWECDSCNYINFRRNMACLKCD 359
+K+GDWIC++C+ +NFARN +C C E RQ+ EWEC C++ N+ RN+ACL+CD
Sbjct: 274 EMKRGDWICSRCSGMNFARNVKCFQCDEARPKRQLTGSEWECPQCDFYNYGRNVACLRCD 333
Query: 360 HRRPK-------MSNASNTPQQEQEVKNNHK 383
+RP+ S+ S+ P+ E+ + N K
Sbjct: 334 CKRPRDSSLNSANSDYSSDPELERRLVENEK 364
>AT1G53460.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ran BP2/NZF zinc finger-like superfamily protein
(TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins
in 88 species: Archae - 11; Bacteria - 27; Metazoa -
119; Fungi - 17; Plants - 101; Viruses - 2; Other
Eukaryotes - 208 (source: NCBI BLink). |
chr1:19954558-19956509 REVERSE LENGTH=314
Length = 314
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 56 AVQVSHPWP-EWVGLMECLLKNGYFH-AEGNPFKNADIGAKEANVIRT----ACLNFGRD 109
++V P E V + L K GY + A + D+G + RT A FG+D
Sbjct: 134 VIRVYKELPIEMVSFVRLLHKEGYLNKANFITGEKLDMGNLDEEYARTFVKFAAERFGKD 193
Query: 110 HFDLVRVLSRKDIASTVVFGCPSLDRKVINSGKRLRAYLGIDEGNVCSSCNLRGDCERAF 169
+ ++ + LS D+ V+FGCPSL+++ + + K LR + I E NVC C L+ C+ F
Sbjct: 194 YQEIAKWLSGSDLKKIVLFGCPSLEKRAVFAAKTLRNFFDIHENNVCEKCVLKEKCK--F 251
Query: 170 VNAREDEGG----RTVDVMRIILTYGLDSIIASVENKPCLKKQVTESVRRLLKEI 220
N +G VM++I Y LD ++ + ++V +SV RLL EI
Sbjct: 252 PNQSVWDGKTKHLHLSVVMKVITLYPLDLTHPKLQ----VPQEVQDSVSRLLTEI 302