Miyakogusa Predicted Gene

Lj0g3v0205369.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205369.1 Non Chatacterized Hit- tr|K0SX99|K0SX99_THAOC
Uncharacterized protein (Fragment) OS=Thalassiosira
oc,42.96,4e-19,HpcH_HpaI,Aldehyde-lyase domain;
2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE,NULL;
Phosphoenolpyruvate/pyru,CUFF.13114.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10750.1 | Symbols:  | Phosphoenolpyruvate carboxylase family...   213   5e-56
AT4G24080.1 | Symbols: ALL1 | aldolase like | chr4:12511384-1251...   159   7e-40
AT4G24070.1 | Symbols:  | carbon-carbon lyases | chr4:12508895-1...    57   5e-09

>AT4G10750.1 | Symbols:  | Phosphoenolpyruvate carboxylase family
           protein | chr4:6618724-6619800 FORWARD LENGTH=358
          Length = 358

 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/179 (61%), Positives = 128/179 (71%), Gaps = 23/179 (12%)

Query: 1   MFPMVESAKSAAKAV--------------HPIVRASAYGIDEGYLNNYLDEILIMCQVES 46
           MFPM+ES K A KAV              H +VRAS YGIDEGYL+NY +EILIMCQVES
Sbjct: 166 MFPMIESRKDATKAVSYCRFPPDGIRGSAHTVVRASNYGIDEGYLSNYAEEILIMCQVES 225

Query: 47  LEGVKKIDEIAAVDGVDCVQMGPLDLSASMGCLWDPGNKNVRDVLREAERKVLAGREXXX 106
            EGVKK DEIAAVDGVDCVQMGPLDLSAS+G LWDPG+K VR+++++AE+ VL       
Sbjct: 226 GEGVKKADEIAAVDGVDCVQMGPLDLSASLGYLWDPGHKKVREMMKKAEKSVLT------ 279

Query: 107 XXXXSEGNDDVYLGGFALPYDGPRDLRSRGYHMVSGAVDVGLFRSAAVEDVESFKASLV 165
                      YL GFA+P+DG  ++R RGYHMV+GAVDVGLFR+AAVEDV  FK  LV
Sbjct: 280 ---TDPAKGGAYLSGFAMPHDGAGEIRGRGYHMVAGAVDVGLFRNAAVEDVRRFKMGLV 335


>AT4G24080.1 | Symbols: ALL1 | aldolase like |
           chr4:12511384-12512290 FORWARD LENGTH=231
          Length = 231

 Score =  159 bits (403), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 84/176 (47%), Positives = 111/176 (63%), Gaps = 23/176 (13%)

Query: 1   MFPMVESAKSAAKAV--------------HPIVRASAYGIDEGYLNNYLDEILIMCQVES 46
           MFPMVE+ +SA++AV              + +VR S++G +EGYL NY D++ IMCQ+ES
Sbjct: 65  MFPMVETGRSASEAVSFCLYRPDGVRGCAYSVVRDSSFGFNEGYLGNYADKLFIMCQIES 124

Query: 47  LEGVKKIDEIAAVDGVDCVQMGPLDLSASMGCLWDPGNKNVRDVLREAERKVLAGREXXX 106
            EG+K + EI AVDG+DCV MGP DLSAS+G L DPGN  V+ V+R AE  VLA      
Sbjct: 125 EEGMKNVKEIIAVDGMDCVMMGPRDLSASLGLLNDPGNPKVKSVMRVAETAVLA------ 178

Query: 107 XXXXSEGNDDVYLGGFALPYDGPRDLRSRGYHMVSGAVDVGLFRSAAVEDVESFKA 162
                  N   YL G A   D   DL++RGYH+V G+ DV L++ A V++V +FKA
Sbjct: 179 ---SDPANGGAYLAGMATAQDKTGDLKARGYHVVLGSTDVSLYKKAVVDEVNAFKA 231


>AT4G24070.1 | Symbols:  | carbon-carbon lyases |
           chr4:12508895-12509095 FORWARD LENGTH=66
          Length = 66

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 32/48 (66%)

Query: 114 NDDVYLGGFALPYDGPRDLRSRGYHMVSGAVDVGLFRSAAVEDVESFK 161
           N   YL G A   D   DL+SRGYHM+ GA DV LF+ A V+DV+SFK
Sbjct: 15  NGGAYLAGMATAQDKAVDLKSRGYHMILGATDVPLFKKAVVDDVKSFK 62