Miyakogusa Predicted Gene
- Lj0g3v0205299.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0205299.2 Non Chatacterized Hit- tr|I1M535|I1M535_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.43677 PE,83.51,0,P-loop
containing nucleoside triphosphate hydrolases,NULL;
Helicase_C,Helicase, C-terminal; no descr,CUFF.13110.2
(186 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c... 272 7e-74
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1... 173 7e-44
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote... 173 8e-44
AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |... 171 2e-43
AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei... 168 2e-42
AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosph... 163 6e-41
AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:193... 145 1e-35
AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:230... 145 2e-35
AT1G26370.1 | Symbols: | RNA helicase family protein | chr1:912... 137 4e-33
AT1G27900.1 | Symbols: | RNA helicase family protein | chr1:971... 126 1e-29
AT4G18465.1 | Symbols: | RNA helicase family protein | chr4:101... 120 4e-28
AT5G10370.1 | Symbols: | helicase domain-containing protein / I... 92 3e-19
AT4G01020.1 | Symbols: | helicase domain-containing protein / I... 89 2e-18
AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protei... 85 2e-17
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204... 70 7e-13
AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu... 69 1e-12
AT1G58060.1 | Symbols: | RNA helicase family protein | chr1:214... 64 8e-11
AT1G58050.1 | Symbols: | RNA helicase family protein | chr1:214... 62 2e-10
AT2G35920.1 | Symbols: | RNA helicase family protein | chr2:150... 62 2e-10
AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 62 2e-10
AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 62 2e-10
AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 60 1e-09
AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 57 5e-09
>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
chr5:4122747-4128660 FORWARD LENGTH=1255
Length = 1255
Score = 272 bits (696), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 132/195 (67%), Positives = 153/195 (78%), Gaps = 16/195 (8%)
Query: 1 MTIHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLP 60
MTIH+TSPPGDILIFMTGQD+IEAAC++L ERM+Q++ ++ LLILPIYSQLP
Sbjct: 758 MTIHITSPPGDILIFMTGQDEIEAACFSLKERMEQLV---SSSSREITNLLILPIYSQLP 814
Query: 61 ADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVF 120
ADLQAKIFQK EDGARKCIVATNIAETSLTVDGI+YVIDTGYGKMKV+NPR+GMDALQVF
Sbjct: 815 ADLQAKIFQKPEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDALQVF 874
Query: 121 PVXXXXXXXXXXX-------------XXXXYLNEMLPSPVPEIQRANLSNVILLLKSLRV 167
P+ YLNEMLPSPVPEIQR NL NV+LLLKSL++
Sbjct: 875 PISRAASDQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKI 934
Query: 168 EDVLDFDFMDPPPRK 182
+++LDFDFMDPPP++
Sbjct: 935 DNLLDFDFMDPPPQE 949
>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
chr1:11742356-11749286 REVERSE LENGTH=1034
Length = 1034
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 122/193 (63%), Gaps = 20/193 (10%)
Query: 1 MTIHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLP 60
+TIH+ P GDIL+F TGQ++IE A L R+ + ++ +L+I PIY+ LP
Sbjct: 594 LTIHVREPLGDILVFFTGQEEIETAEEILKHRIRGLGT-------KIRELIICPIYANLP 646
Query: 61 ADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVF 120
++LQAKIF+ +GARK ++ATNIAETSLT+DGI YV+D G+ KMK YNPR GM++L +
Sbjct: 647 SELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLIT 706
Query: 121 PVXXXXXXXXXXXXXXX-------------YLNEMLPSPVPEIQRANLSNVILLLKSLRV 167
P+ Y N++ + VPE+QR NL++V+L LKSL +
Sbjct: 707 PISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGI 766
Query: 168 EDVLDFDFMDPPP 180
D+++FDFMDPPP
Sbjct: 767 HDLINFDFMDPPP 779
>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein
| chr1:11742356-11749286 REVERSE LENGTH=1044
Length = 1044
Score = 173 bits (438), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 122/193 (63%), Gaps = 20/193 (10%)
Query: 1 MTIHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLP 60
+TIH+ P GDIL+F TGQ++IE A L R+ + ++ +L+I PIY+ LP
Sbjct: 604 LTIHVREPLGDILVFFTGQEEIETAEEILKHRIRGLGT-------KIRELIICPIYANLP 656
Query: 61 ADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVF 120
++LQAKIF+ +GARK ++ATNIAETSLT+DGI YV+D G+ KMK YNPR GM++L +
Sbjct: 657 SELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLIT 716
Query: 121 PVXXXXXXXXXXXXXXX-------------YLNEMLPSPVPEIQRANLSNVILLLKSLRV 167
P+ Y N++ + VPE+QR NL++V+L LKSL +
Sbjct: 717 PISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGI 776
Query: 168 EDVLDFDFMDPPP 180
D+++FDFMDPPP
Sbjct: 777 HDLINFDFMDPPP 789
>AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |
chr3:9750122-9753719 REVERSE LENGTH=1168
Length = 1168
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 119/192 (61%), Gaps = 20/192 (10%)
Query: 1 MTIHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLP 60
+ IHLT P GDIL+F+TGQ++I++AC +L ERM + VP+L+ILP+YS LP
Sbjct: 715 LQIHLTEPEGDILVFLTGQEEIDSACQSLYERMKGL-------GKNVPELIILPVYSALP 767
Query: 61 ADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVF 120
+++Q++IF G RK +VATNIAE SLT+DGI+YV+D G+ K VYNP+ G+++L +
Sbjct: 768 SEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVIT 827
Query: 121 PVXXXXXXXXXXX-------------XXXXYLNEMLPSPVPEIQRANLSNVILLLKSLRV 167
P+ Y NEM P+ +PEIQR NL L +K++ +
Sbjct: 828 PISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGI 887
Query: 168 EDVLDFDFMDPP 179
D+L FDFMDPP
Sbjct: 888 NDLLSFDFMDPP 899
>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
chr2:14872728-14879615 FORWARD LENGTH=1044
Length = 1044
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 122/193 (63%), Gaps = 20/193 (10%)
Query: 1 MTIHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLP 60
+TIH+ P GD+L+F+ GQ++IEA L ++ + ++ +L+I PIY+ LP
Sbjct: 604 LTIHVKEPLGDVLVFLPGQEEIEAVEENLKHKIRGLGT-------KIRELIICPIYANLP 656
Query: 61 ADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVF 120
++LQAKIF+ +GARK ++ATNIAETSLT+DGI YV+D G+ KMK YNPR GM++L V
Sbjct: 657 SELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLVT 716
Query: 121 PVXXXXXXXXXXXXXXX-------------YLNEMLPSPVPEIQRANLSNVILLLKSLRV 167
P+ Y N++ + VPEIQR NL++V+L LKSL +
Sbjct: 717 PISKASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVLSLKSLGI 776
Query: 168 EDVLDFDFMDPPP 180
++L+FDFMDPPP
Sbjct: 777 HNLLNFDFMDPPP 789
>AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:9388613-9390774
REVERSE LENGTH=656
Length = 656
Score = 163 bits (413), Expect = 6e-41, Method: Composition-based stats.
Identities = 85/187 (45%), Positives = 115/187 (61%), Gaps = 16/187 (8%)
Query: 3 IHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPAD 62
IH T GDIL+F+TGQ++IE L RM + + +++I PIYS LP
Sbjct: 417 IHQTEAIGDILVFLTGQEEIETVETNLKRRMMDL-------GTKGSEIIICPIYSNLPTP 469
Query: 63 LQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVFPV 122
LQAK+F+ A G RK ++ATNIAETSLT+DG+ YVID GY K+ YNPR GM++L V P+
Sbjct: 470 LQAKVFEPAPKGTRKVVLATNIAETSLTIDGVKYVIDPGYCKINSYNPRTGMESLLVTPI 529
Query: 123 XXXXXXXXXXXX---------XXXYLNEMLPSPVPEIQRANLSNVILLLKSLRVEDVLDF 173
+ ++ P+ +PEIQRANL++V+L LKSL ++DV +F
Sbjct: 530 SKASAAQRAGRSGRTGPGKCFRLYNIKDLEPTTIPEIQRANLASVVLTLKSLGIQDVFNF 589
Query: 174 DFMDPPP 180
DFMDPPP
Sbjct: 590 DFMDPPP 596
>AT2G47250.1 | Symbols: | RNA helicase family protein |
chr2:19399923-19402981 REVERSE LENGTH=729
Length = 729
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 114/197 (57%), Gaps = 27/197 (13%)
Query: 3 IHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPAD 62
IH+ PPGDIL+F+TG+++IE AC + + + + QV + ++P+YS LP
Sbjct: 273 IHMCEPPGDILVFLTGEEEIEDACRKINKEVSNL-------GDQVGPVKVVPLYSTLPPA 325
Query: 63 LQAKIFQKA-----EDG--ARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMD 115
+Q KIF A E G RK +V+TNIAETSLT+DGI YVID G+ K KVYNPR+ ++
Sbjct: 326 MQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVE 385
Query: 116 ALQVFPVXXXXXXXXXXX-------------XXXXYLNEMLPSPVPEIQRANLSNVILLL 162
+L V P+ + N++ P PEI R+NL+N +L L
Sbjct: 386 SLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTL 445
Query: 163 KSLRVEDVLDFDFMDPP 179
K L ++D++ FDFMDPP
Sbjct: 446 KKLGIDDLVHFDFMDPP 462
>AT3G62310.1 | Symbols: | RNA helicase family protein |
chr3:23057516-23060561 REVERSE LENGTH=726
Length = 726
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 114/197 (57%), Gaps = 27/197 (13%)
Query: 3 IHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPAD 62
IH+ PPGDIL+F+TG+++IE AC + + + + QV + ++P+YS LP
Sbjct: 269 IHMCEPPGDILVFLTGEEEIEDACRKINKEVGNL-------GDQVGPIKVVPLYSTLPPA 321
Query: 63 LQAKIFQKA-----EDG--ARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMD 115
+Q KIF A E G RK +V+TNIAETSLT+DGI YVID G+ K KVYNPR+ ++
Sbjct: 322 MQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVE 381
Query: 116 ALQVFPVXXXXXXXXXXX-------------XXXXYLNEMLPSPVPEIQRANLSNVILLL 162
+L V P+ + N++ P PEI R+NL+N +L L
Sbjct: 382 SLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTL 441
Query: 163 KSLRVEDVLDFDFMDPP 179
K L ++D++ FDFMDPP
Sbjct: 442 KKLGIDDLVHFDFMDPP 458
>AT1G26370.1 | Symbols: | RNA helicase family protein |
chr1:9122030-9125368 REVERSE LENGTH=717
Length = 717
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 106/191 (55%), Gaps = 19/191 (9%)
Query: 3 IHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPAD 62
IH PGDIL+F+TGQD+IE+ + ER+ I KLL L I+S LP++
Sbjct: 285 IHFEEKPGDILVFLTGQDEIESVERLVQERLQNI-------PEDKRKLLPLAIFSALPSE 337
Query: 63 LQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVFPV 122
Q K+F A G RK I+ATNIAETS+T+ GI YVID G+ K + Y+P GM++L V P
Sbjct: 338 QQMKVFAPAPTGFRKVILATNIAETSITIPGIRYVIDPGFVKARSYDPSKGMESLDVVPA 397
Query: 123 XXXXXXXXXXXXX------------XXYLNEMLPSPVPEIQRANLSNVILLLKSLRVEDV 170
++ S PEI+R NLSN+IL LK+L ++D+
Sbjct: 398 SKAQTLQRSGRAGREGPGKSFRLYPEREFEKLEDSTKPEIKRCNLSNIILQLKALGIDDI 457
Query: 171 LDFDFMDPPPR 181
+ FDF+D P R
Sbjct: 458 VGFDFIDKPSR 468
>AT1G27900.1 | Symbols: | RNA helicase family protein |
chr1:9715615-9720346 REVERSE LENGTH=700
Length = 700
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 3 IHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPAD 62
IH+ P GDILIFMTGQDDIE L E++ + +I P++ LP +
Sbjct: 207 IHVREPEGDILIFMTGQDDIEKLVSRLEEKVRSL------AEGSCMDAIIYPLHGSLPPE 260
Query: 63 LQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVFPV 122
+Q ++F R+ IV+TNIAETSLTVDG+ YVID+GY K + YNP GM +L V +
Sbjct: 261 MQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQI 320
Query: 123 XXXXXXXXXXXXXXX-------------YLNEMLPSPVPEIQRANLSNVILLLKSLRVE- 168
Y ++ L + +PEIQR +L+ +L LKSL +
Sbjct: 321 SKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDLPD 380
Query: 169 -DVLDFDFMDPP 179
D+L FDF+D P
Sbjct: 381 IDILKFDFLDAP 392
>AT4G18465.1 | Symbols: | RNA helicase family protein |
chr4:10197056-10201611 FORWARD LENGTH=695
Length = 695
Score = 120 bits (302), Expect = 4e-28, Method: Composition-based stats.
Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 20/192 (10%)
Query: 1 MTIHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLP 60
+ I+ PPGD+L+F+TGQ+DIE A L E LL LP+YS L
Sbjct: 267 LLINEREPPGDVLVFLTGQEDIETAIKLLEEEAHS-------NQKNSSGLLPLPLYSGLS 319
Query: 61 ADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVF 120
Q IF G RK I++TNIAETSLT++G+ YVID+G+ K K YNP +++L V
Sbjct: 320 RSEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYVIDSGFSKQKFYNPISDIESLVVA 379
Query: 121 PVXXXXXXXXX-------------XXXXXXYLNEMLPSPVPEIQRANLSNVILLLKSLRV 167
P+ +LN+M +PE+QR+NL + ++ LK+L +
Sbjct: 380 PISKASARQRSGRAGRVRPGKCYRLYTEDYFLNQMPGEGIPEMQRSNLVSTVIQLKALGI 439
Query: 168 EDVLDFDFMDPP 179
+++L FD+ PP
Sbjct: 440 DNILGFDWPAPP 451
>AT5G10370.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr5:3261245-3267188 FORWARD LENGTH=1775
Length = 1775
Score = 91.7 bits (226), Expect = 3e-19, Method: Composition-based stats.
Identities = 63/189 (33%), Positives = 89/189 (47%), Gaps = 29/189 (15%)
Query: 3 IHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPAD 62
IH T G IL F+T Q ++E AC ER P + LP++ +L +
Sbjct: 518 IHKTEKEGTILAFLTSQAEVEWAC----ERF------------ITPSAIALPLHGKLSFE 561
Query: 63 LQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVFPV 122
Q ++FQ G RK I ATNIAETSLT+ G+ YVID+G K Y PR GM L+V V
Sbjct: 562 EQFRVFQN-HPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCRV 620
Query: 123 XXXXXXXXX------------XXXXXXYLNEMLPSPVPEIQRANLSNVILLLKSLRVEDV 170
+ M + PEI+R +L +L + +L V ++
Sbjct: 621 SQSSARQRAGRAGRTEPGRCYRLYSKNDFDSMNLNQEPEIRRVHLGVALLRMLALGVNNI 680
Query: 171 LDFDFMDPP 179
+F+F+D P
Sbjct: 681 AEFNFVDAP 689
>AT4G01020.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr4:439086-445043 FORWARD LENGTH=1787
Length = 1787
Score = 88.6 bits (218), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/189 (32%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 3 IHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPAD 62
IH T G IL F+T Q ++E AC ER P + LP++ +L +
Sbjct: 515 IHKTEKEGTILAFLTSQAEVEWAC----ERF------------VAPSAIALPLHGKLSFE 558
Query: 63 LQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVFPV 122
Q +FQ G RK I ATNIAETSLT+ G+ YVID+G K Y PR GM L+V V
Sbjct: 559 EQFMVFQNYP-GRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQV 617
Query: 123 XXXXXXXXX------------XXXXXXYLNEMLPSPVPEIQRANLSNVILLLKSLRVEDV 170
+ M + PEI+R +L +L + +L ++++
Sbjct: 618 SQSSARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEPEIRRVHLGVALLRMLALGIDNI 677
Query: 171 LDFDFMDPP 179
F+F+D P
Sbjct: 678 AAFEFVDAP 686
>AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protein |
chr1:12099738-12104108 REVERSE LENGTH=1237
Length = 1237
Score = 85.1 bits (209), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Query: 49 KLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVY 108
KL +LP+Y+ L Q ++F++ E R +VATN+AETSLT+ GI YV+DTG K+K Y
Sbjct: 646 KLRVLPLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVDTGRVKVKNY 705
Query: 109 NPRLGMDALQVFPVXXXXXXXXX-------------XXXXXXYLNEMLPSPVPEIQRANL 155
+ + GM++ +V + + N S +PEI + +
Sbjct: 706 DSKTGMESYEVDWISQASASQRAGRAGRTGPGHCYRLYSSAVFSNIFEESSLPEIMKVPV 765
Query: 156 SNVILLLKSLRVEDVLDFDFMDPPP----RKMER 185
VILL+KS+ + V +F F PP R+ ER
Sbjct: 766 DGVILLMKSMNIPKVENFPFPTPPEPSAIREAER 799
>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
chr1:2040567-2047333 FORWARD LENGTH=1576
Length = 1576
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 7 SPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPADLQAK 66
S G IL+F+ G ++I L + D+ K +IL ++S++PA+ Q K
Sbjct: 573 SKDGAILVFLPGWEEISKTKEKLLD--DRFFA-------HSAKFIILCLHSRVPAEEQKK 623
Query: 67 IFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQ 118
+F + G RK ++ATNIAE+++T+D + YVID+G K K Y+P + LQ
Sbjct: 624 VFNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLQ 675
>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
Length = 1299
Score = 69.3 bits (168), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 7 SPPGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPADLQAK 66
S G IL+F+ G DDI L E K I+ ++S +PA Q K
Sbjct: 549 SEDGAILVFLPGWDDINKTRQRLLEN---------PFFADSAKFDIICLHSMVPAGEQKK 599
Query: 67 IFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQ 118
+F + G RK ++ATNIAE+++T+D + YVID+G K K Y+P + LQ
Sbjct: 600 VFNRPPPGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQ 651
>AT1G58060.1 | Symbols: | RNA helicase family protein |
chr1:21489480-21501775 REVERSE LENGTH=1459
Length = 1459
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 51 LILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNP 110
+LP++S + + Q K+F + G RK I ATNIAETS+T+D + YVID+G K YNP
Sbjct: 948 WLLPLHSSIASSEQRKVFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNP 1007
Query: 111 RLGMDAL 117
+ + ++
Sbjct: 1008 QKKLSSM 1014
>AT1G58050.1 | Symbols: | RNA helicase family protein |
chr1:21478590-21487839 REVERSE LENGTH=1417
Length = 1417
Score = 62.0 bits (149), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 52 ILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPR 111
+LP++S + + Q K+F + G RK I+ATNIAETS+T++ + YVID+G K YNP
Sbjct: 916 LLPLHSSIASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNPH 975
Query: 112 LGMDAL 117
+ ++
Sbjct: 976 KKLSSM 981
>AT2G35920.1 | Symbols: | RNA helicase family protein |
chr2:15075674-15080506 FORWARD LENGTH=995
Length = 995
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 10 GDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPADLQAKIFQ 69
G IL+F+TG D+I L E+++ K L+LP++ +P Q +IF
Sbjct: 504 GAILVFLTGWDEISK----LLEKIN-----MNNFLGDSSKFLVLPLHGSMPTVNQREIFD 554
Query: 70 KAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYN 109
+ RK ++ATNIAE+S+T+D + YV+D G K Y+
Sbjct: 555 RPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYD 594
>AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989670-17995169 REVERSE LENGTH=1197
Length = 1197
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 9 PGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPADLQAKIF 68
PG +L+FMTG DDI + L +++ K+L+L + + + Q IF
Sbjct: 578 PGAVLVFMTGWDDINS----LKNQLE-----AHSLLGDPNKVLLLACHGSMASSEQRLIF 628
Query: 69 QKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYN 109
+ +G RK ++ATN+AETS+T++ + YVID G K Y+
Sbjct: 629 DRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYD 669
>AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989517-17995169 REVERSE LENGTH=1206
Length = 1206
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 9 PGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPADLQAKIF 68
PG +L+FMTG DDI + L +++ K+L+L + + + Q IF
Sbjct: 578 PGAVLVFMTGWDDINS----LKNQLE-----AHSLLGDPNKVLLLACHGSMASSEQRLIF 628
Query: 69 QKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYN 109
+ +G RK ++ATN+AETS+T++ + YVID G K Y+
Sbjct: 629 DRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYD 669
>AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:88847-94635 REVERSE LENGTH=1113
Length = 1113
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
Query: 9 PGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKL-LILPIYSQLPADLQAKI 67
PG ILIF+TG DDI + L E++ QI P L ++L + + Q I
Sbjct: 498 PGGILIFLTGWDDISS----LKEKL-QIHPIFGN-----PDLVMLLACHGSMETFEQRLI 547
Query: 68 FQKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYN 109
F++ G RK ++ATNIAETS+T++ + +VID G K Y+
Sbjct: 548 FEEPASGVRKIVLATNIAETSITINDVAFVIDCGKAKETSYD 589
>AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:1428796-1434516 FORWARD LENGTH=1161
Length = 1161
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 21/177 (11%)
Query: 9 PGDILIFMTGQDDIEAACYALAERMDQIMVXXXXXXXQVPKLLILPIYSQLPADLQAKIF 68
PG +L+F+TG DDI + DQI ++L+L + + Q IF
Sbjct: 539 PGAVLVFLTGWDDIRSLS-------DQIKAHPLLGDPN--RVLLLMCHGSMATAEQRLIF 589
Query: 69 QKAEDGARKCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVFPVXXXXXX 128
++A RK ++ATN+AE S+T++ + +V+D G K Y+ L +
Sbjct: 590 ERAPPNIRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASAR 649
Query: 129 XXXXXXXXXYLNE---MLPSPV---------PEIQRANLSNVILLLKSLRVEDVLDF 173
+ E + P V PE+ R L+++ L +KSL+VE + +F
Sbjct: 650 QRRGRAGRLFPGECYHLYPKCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVESIAEF 706