Miyakogusa Predicted Gene

Lj0g3v0205039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205039.1 Non Chatacterized Hit- tr|I1JJ07|I1JJ07_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,55.33,0,SUBFAMILY NOT NAMED,NULL; ATP-DEPENDENT RNA
HELICASE,NULL,CUFF.13084.1
         (269 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu...   233   1e-61
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204...   222   2e-58
AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...    87   9e-18
AT2G35920.1 | Symbols:  | RNA helicase family protein | chr2:150...    86   4e-17
AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family prote...    78   5e-15
AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...    78   6e-15
AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...    75   5e-14
AT1G58060.1 | Symbols:  | RNA helicase family protein | chr1:214...    66   3e-11
AT1G58050.1 | Symbols:  | RNA helicase family protein | chr1:214...    56   2e-08

>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue and
            tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
          Length = 1299

 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/311 (44%), Positives = 190/311 (61%), Gaps = 44/311 (14%)

Query: 1    MLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPII 60
            ML F++L+NCLDPALTL CA+ + +PFT P+   E+++AAAA+ ELASL GG SDHL ++
Sbjct: 770  MLFFAVLVNCLDPALTLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVV 829

Query: 61   AVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLIHDDVSSYCLNS 120
            A FECW+N+   GL   FCSQYFVS S M ML  MR++L +EL ++G+I +D+SS   NS
Sbjct: 830  AAFECWKNAKGRGLSAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNS 889

Query: 121  HDPGVLNAVLVAGMYPVLGKSLPN-ESGKRVFVKTETCNEVGLTSHSVNFKLFSQKNFGC 179
             DPG+L AVL  G+YP++G+  P   + +R  V+T +  +V + S S NF L S+K +  
Sbjct: 890  RDPGILRAVLAVGLYPMVGRLCPAFGNNRRTIVETASGAKVRVHSLSNNFNLSSKK-YDE 948

Query: 180  SLLAYDEIARDDWGMSISNCSVVGPLPLLLLCKEIAVTSI-------------------- 219
            SLL +DEI R D GM I NC+V   LPLLL+  EIAV                       
Sbjct: 949  SLLVFDEITRGDGGMHIRNCTVARDLPLLLISTEIAVAPTGSSDSDDSNEEEEDDEEVAA 1008

Query: 220  -------------------KDSKEGDK---SSDNIVRVIVDRWLDFRSKALDISHINYLR 257
                               ++S+ G K   S +N V+++VDRWL FR+ AL+++ +  LR
Sbjct: 1009 NTNEEVAANTNEEGMDIHKEESRRGAKMMSSPENSVKLVVDRWLPFRTTALEVAQMYILR 1068

Query: 258  NQLSAAILFKV 268
             +L A+ILFKV
Sbjct: 1069 ERLMASILFKV 1079


>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
            chr1:2040567-2047333 FORWARD LENGTH=1576
          Length = 1576

 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 180/299 (60%), Gaps = 32/299 (10%)

Query: 1    MLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPII 60
            M+ F+IL+NCLDPAL L CA+   DPFT P+   ++K+AAAA+ ELASLYG  SDHL  +
Sbjct: 794  MIYFAILVNCLDPALILACAADEKDPFTMPLSPGDRKKAAAAKHELASLYGDHSDHLATV 853

Query: 61   AVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLIHDDVSSYCLNS 120
            A F+CW+N+   G  + FCS+YF+SQ  M  L  +  +L  EL ++G+I    S+  LN+
Sbjct: 854  AAFQCWKNAKASGQAKEFCSKYFISQVVMKRLDDLCRKLQGELNRHGVIPSSSSNCSLNA 913

Query: 121  HDPGVLNAVLVAGMYPVLGKSLP-NESGKRVFVKTETCNEVGLTSHSVNFKLFSQKNFGC 179
            HDPG+L AV+  G+YP+LG+  P +++  R  ++T    +V + S S N  + S K F  
Sbjct: 914  HDPGILRAVIAVGLYPMLGRMCPLSKNRTRSVIETIAGAKVRVPSLSNNVDMSSTK-FDE 972

Query: 180  SLLAYDEIARDDWGMSISNCSVVGPLPLLLLCKEIAVTSIK--DSKEGDKSSD------- 230
            +L+ +DEI R DWG+ I +C+V+  +P+LL  +EIAV++ +  D+ + D   D       
Sbjct: 973  ALIVFDEITRGDWGVVIRSCTVLPTIPVLLFSREIAVSTTESYDAVKSDDEEDHKVGNVG 1032

Query: 231  ---------------------NIVRVIVDRWLDFRSKALDISHINYLRNQLSAAILFKV 268
                                 N V+V+VDRWL F+  A +I+ +  LR +L A+ILFKV
Sbjct: 1033 DAMDIDKEVGRPGEKIMLGPENSVKVVVDRWLPFKVTAFEIAQMYILRERLMASILFKV 1091


>AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr5:1428796-1434516 FORWARD LENGTH=1161
          Length = 1161

 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 20/222 (9%)

Query: 1   MLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPII 60
           MLI   +  C DP LT+       DPF  P   D+K  A +A+   ++     SDH+ ++
Sbjct: 757 MLIMGAIFRCFDPILTIVSGLSVRDPFLLP--QDKKDLALSAKLRFSA--KDYSDHMALV 812

Query: 61  AVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLIHDDVSSYCLNS 120
             FE W+++ R G    FC + F+S  T+  + S+R +    L + GL+HDD++     S
Sbjct: 813 RAFEGWKDAEREGSAYEFCWRNFLSAQTLQAIHSLRKQFNYILKEAGLVHDDLALNNKLS 872

Query: 121 HDPGVLNAVLVAGMYPVLGKSLPNESGKRVFVKTETCNEVGLTSHSVNFK---------L 171
           H+  ++ AV+ +G++P +   +  E+   +  KT    +V L ++SVN +         +
Sbjct: 873 HNQSLVRAVICSGLFPGIASVVHRETS--MSFKTMDDGQVSLYANSVNSRFPTIPYPWLV 930

Query: 172 FSQKNFGCSLLAYDEIARDD-----WGMSISNCSVVGPLPLL 208
           F +K    ++L  D     D     +G S+S    VG L +L
Sbjct: 931 FGEKVKVNAVLIRDSTGVPDSSLILFGGSLSTGVQVGHLKML 972


>AT2G35920.1 | Symbols:  | RNA helicase family protein |
           chr2:15075674-15080506 FORWARD LENGTH=995
          Length = 995

 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 1   MLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPII 60
           ML+   +  C++PALT+  A  +  PF  P+   E+   A   F   S    CSDH+ ++
Sbjct: 721 MLLIGAIFQCVNPALTIAAALAYRSPFVLPLNRKEEADEAKRYFAGDS----CSDHIALL 776

Query: 61  AVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLI-HDDVSSYCLN 119
             +E ++++ R G E+ FC Q F+S  T+ M+  MR +    L   G +     ++Y   
Sbjct: 777 KAYEGYRDAKRGGNEKDFCWQNFLSPVTLRMMEDMRNQFLDLLSDIGFVDKSKPNAYNQY 836

Query: 120 SHDPGVLNAVLVAGMYPVLGKSLPNESGKRVFVKTETCNEVGLTSHSVNFK--LFS 173
           S+D  +++AVL AG+YP + +      GKR    T+   +V +   SVN +  LFS
Sbjct: 837 SYDMEMISAVLCAGLYPNVVQC--KRRGKRTAFYTKELGKVDIHPGSVNARVNLFS 890


>AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989517-17995169 REVERSE LENGTH=1206
          Length = 1206

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 7/168 (4%)

Query: 1   MLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPII 60
           MLI   + NCLDP +T+       DPF  P   D+K  A  AR + +      SDHL ++
Sbjct: 796 MLILGAIFNCLDPVMTVVAGLSVRDPFLMPF--DKKDLAETARSKFSGR--DYSDHLTLV 851

Query: 61  AVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLIHDDVSSYCLNS 120
             +  W+++ R      +C + F+S  T+  + SMR +    L +  LI D++      S
Sbjct: 852 RAYNGWKDAERTHSGYDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLI-DNIEGCSKLS 910

Query: 121 HDPGVLNAVLVAGMYPVLGKSLPNESGKRVFVKTETCNEVGLTSHSVN 168
           HD  ++ A++ AGM+P +   +  E  K + +KT    +V L S SVN
Sbjct: 911 HDEHLVRAIICAGMFPGVCSVVNKE--KSITLKTMEDGQVLLYSSSVN 956


>AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989670-17995169 REVERSE LENGTH=1197
          Length = 1197

 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 7/168 (4%)

Query: 1   MLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPII 60
           MLI   + NCLDP +T+       DPF  P   D+K  A  AR + +      SDHL ++
Sbjct: 796 MLILGAIFNCLDPVMTVVAGLSVRDPFLMPF--DKKDLAETARSKFSGR--DYSDHLTLV 851

Query: 61  AVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLIHDDVSSYCLNS 120
             +  W+++ R      +C + F+S  T+  + SMR +    L +  LI D++      S
Sbjct: 852 RAYNGWKDAERTHSGYDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLI-DNIEGCSKLS 910

Query: 121 HDPGVLNAVLVAGMYPVLGKSLPNESGKRVFVKTETCNEVGLTSHSVN 168
           HD  ++ A++ AGM+P +   +  E  K + +KT    +V L S SVN
Sbjct: 911 HDEHLVRAIICAGMFPGVCSVVNKE--KSITLKTMEDGQVLLYSSSVN 956


>AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr2:88847-94635 REVERSE LENGTH=1113
          Length = 1113

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 23/223 (10%)

Query: 1   MLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCSDHLPII 60
           MLI   ++ CLDP LT+       DPF  P   D+K  A AA+ + +  +   SDHL ++
Sbjct: 716 MLILGAILGCLDPILTVAAGLSVRDPFLTP--QDKKDLAEAAKSQFSRDH---SDHLALV 770

Query: 61  AVFECWQNSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLIHDDVSSYCLNS 120
             +E W+ +        +C + F+S  ++  + S+R E  + L   GLI  + S      
Sbjct: 771 RAYEGWKKAEEESAVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNPSICNSEG 830

Query: 121 HDPGVLNAVLVAGMYPVLGKSLPNESGKRVF-VKTETCNEVGLTSHSVNFK--------- 170
           +D  +  AV+  GMYP +   + NE   R F +KT    +V L S+S N +         
Sbjct: 831 NDANLTRAVICYGMYPGICSVVHNE---RSFSLKTMEDGQVLLYSNSENARETKIPYPWL 887

Query: 171 LFSQKNFGCSLLAYDEIARDD-----WGMSISNCSVVGPLPLL 208
           +F++K    S+   D  A  D     +G SIS     G L +L
Sbjct: 888 VFNEKIKVNSVFLRDSTACSDSTLILFGGSISKGDTDGHLKML 930


>AT1G58060.1 | Symbols:  | RNA helicase family protein |
            chr1:21489480-21501775 REVERSE LENGTH=1459
          Length = 1459

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 35/169 (20%)

Query: 1    MLIFSILMNCLDPALTLECASVFDDPFTHPVLHDEKKRAAAARFELASLYGGCS------ 54
            ML++  +  CL P L++     +  PF +P   DEK+     +  L S  G  S      
Sbjct: 1134 MLLYGGIFGCLSPILSIAAFLSYKSPFIYP--KDEKQNVDRVKLALLSDNGVSSSDLNNN 1191

Query: 55   ----DHLPIIAVFECWQ---NSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNG 107
                DHL ++  ++ W        M   +RFC   F+S S M M+  MR +  T L   G
Sbjct: 1192 DRQSDHLLMMVAYDKWVKILQERGMKAAQRFCESKFLSSSVMRMIRDMRVQFGTLLADIG 1251

Query: 108  LIH--------------------DDVSSYCLNSHDPGVLNAVLVAGMYP 136
            LI+                    D    + + S  P V+ A+L AG+YP
Sbjct: 1252 LINLPKTGEFSGRKKENLDVWFSDPTQPFNMYSQQPEVVKAILCAGLYP 1300


>AT1G58050.1 | Symbols:  | RNA helicase family protein |
            chr1:21478590-21487839 REVERSE LENGTH=1417
          Length = 1417

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 104/281 (37%), Gaps = 49/281 (17%)

Query: 1    MLIFSILMNCLDPALTLEC-ASVFDDPFTHPVLHDEKKRAAAA----RFELASLYGG--- 52
            ML++  +  CL P L++    S    PF +        R   A    + E +S       
Sbjct: 1101 MLLYGGIFGCLSPILSIAAFLSCCKSPFVYAKDEQNVDRVKLALLSDKLESSSNLNNNDR 1160

Query: 53   CSDHLPIIAVFECWQ---NSTRMGLEERFCSQYFVSQSTMHMLSSMRTELATELFQNGLI 109
             SDHL ++  +E W    +       E FC   F++ S M M+   R E    L   GLI
Sbjct: 1161 QSDHLLMVVAYEKWVRILHEQGFKAAESFCESKFLNSSVMRMMRERRVEFGMLLADIGLI 1220

Query: 110  H-----------------DDVSSYCLNSHDPGVLNAVLVAGMYPVLGKSL------PNES 146
            +                 D    + + S +P V+ A+L AG+ P + + L      P E 
Sbjct: 1221 NLPKGKGRRKENFDVWFSDKTQPFNMYSQEPEVVKAILCAGLCPNIAEGLVNRLTKPAEE 1280

Query: 147  GKRVFVKTETCNEVGLTSHSVNFKLFSQKNFGCSLLAYDEIARDDWGMSISNCSVVGPLP 206
             +R  V  +   EV +  +S+N      K F    + + E       + + + +VV P  
Sbjct: 1281 TQRYAVWHDGKREVHIHRNSINKNC---KAFQYPFIVFLEKLETKKVVYLQDTTVVSPFS 1337

Query: 207  LLLLCKEIAVTSIKDSKEGDKSSDNIVRVIVDRWLDFRSKA 247
            +LL    I V     S            V +D WL   + A
Sbjct: 1338 ILLFGGSINVHHQSGS------------VTIDGWLKLTAPA 1366