Miyakogusa Predicted Gene

Lj0g3v0205029.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205029.1 tr|C1E6K7|C1E6K7_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_108292,40,5e-19,coiled-coil,NULL; MEMBRIN,NULL; VESICLE
TRANSPORT V-SNARE PROTEIN VTI1-RELATED,NULL; no
description,,CUFF.13094.1
         (141 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36900.1 | Symbols: MEMB11, ATMEMB11 | membrin 11 | chr2:1549...   180   3e-46
AT2G36900.2 | Symbols: MEMB11, ATMEMB11 | membrin 11 | chr2:1549...   180   4e-46
AT5G50440.1 | Symbols: MEMB12, ATMEMB12 | membrin 12 | chr5:2053...   176   4e-45

>AT2G36900.1 | Symbols: MEMB11, ATMEMB11 | membrin 11 |
           chr2:15491615-15492587 REVERSE LENGTH=225
          Length = 225

 Score =  180 bits (457), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 113/142 (79%), Gaps = 1/142 (0%)

Query: 1   MDRLWGSVGGKPQRDLWRRKVEQIAEEAASLKESLDKFNLRNQKRISEAKERAELLGRAN 60
           MD LW S+  K QRDLWRRK EQ+ EEA  L  SL+K+  RNQ+++ EAKERA+LLGRA+
Sbjct: 64  MDTLWRSIPVKSQRDLWRRKTEQVGEEAEYLNLSLEKYMSRNQRKMLEAKERADLLGRAS 123

Query: 61  GD-SHVMRIFDEEAQAMQSVRTSARELENANAIGEAILSSIHGQRERLKSAHRKALDILN 119
           G+ +H+++IFDEEAQAM SV+ S R LE + + G AILS    QR+RLKSA RKALD+LN
Sbjct: 124 GEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDVLN 183

Query: 120 TVGISNSVLRLIERRNRVDQWI 141
           TVG+SNSVLRLIERRNRVD WI
Sbjct: 184 TVGLSNSVLRLIERRNRVDTWI 205


>AT2G36900.2 | Symbols: MEMB11, ATMEMB11 | membrin 11 |
           chr2:15491049-15492587 REVERSE LENGTH=225
          Length = 225

 Score =  180 bits (456), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 113/142 (79%), Gaps = 1/142 (0%)

Query: 1   MDRLWGSVGGKPQRDLWRRKVEQIAEEAASLKESLDKFNLRNQKRISEAKERAELLGRAN 60
           MD LW S+  K QRDLWRRK EQ+ EEA  L  SL+K+  RNQ+++ EAKERA+LLGRA+
Sbjct: 64  MDTLWRSIPVKSQRDLWRRKTEQVGEEAEYLNLSLEKYMSRNQRKMLEAKERADLLGRAS 123

Query: 61  GD-SHVMRIFDEEAQAMQSVRTSARELENANAIGEAILSSIHGQRERLKSAHRKALDILN 119
           G+ +H+++IFDEEAQAM SV+ S R LE + + G AILS    QR+RLKSA RKALD+LN
Sbjct: 124 GEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDVLN 183

Query: 120 TVGISNSVLRLIERRNRVDQWI 141
           TVG+SNSVLRLIERRNRVD WI
Sbjct: 184 TVGLSNSVLRLIERRNRVDTWI 205


>AT5G50440.1 | Symbols: MEMB12, ATMEMB12 | membrin 12 |
           chr5:20537644-20538452 REVERSE LENGTH=219
          Length = 219

 Score =  176 bits (447), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 112/142 (78%), Gaps = 1/142 (0%)

Query: 1   MDRLWGSVGGKPQRDLWRRKVEQIAEEAASLKESLDKFNLRNQKRISEAKERAELLGRAN 60
           MD LW S+  K QRDLWRRK EQ+ EEA  L +SL+K+  RNQ+++ EAKERA+LLGR +
Sbjct: 58  MDGLWRSIPVKSQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERADLLGRGS 117

Query: 61  GD-SHVMRIFDEEAQAMQSVRTSARELENANAIGEAILSSIHGQRERLKSAHRKALDILN 119
           G+ +H+++IFDEEAQ M SV+ S R LE++   G AILS    QR+RLKSA RKALD+LN
Sbjct: 118 GEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQRKALDVLN 177

Query: 120 TVGISNSVLRLIERRNRVDQWI 141
           TVG+SNSVLRLIERRNRVD WI
Sbjct: 178 TVGLSNSVLRLIERRNRVDTWI 199