Miyakogusa Predicted Gene

Lj0g3v0205009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205009.1 Non Chatacterized Hit- tr|Q9SV86|Q9SV86_ARATH
Putative uncharacterized protein AT4g10360
OS=Arabidop,37.7,2e-19,SUBFAMILY NOT NAMED,NULL; CT120 PROTEIN,NULL;
TRAM_LAG1_CLN8,TRAM/LAG1/CLN8 homology domain; TLC,TRA,CUFF.13082.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19645.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   189   7e-49
AT4G19645.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   189   7e-49
AT1G31300.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   181   1e-46
AT1G31300.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   181   1e-46
AT4G10360.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   103   6e-23
AT4G10360.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   103   6e-23

>AT4G19645.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr4:10689941-10691298
           REVERSE LENGTH=268
          Length = 268

 Score =  189 bits (479), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 113/141 (80%), Gaps = 1/141 (0%)

Query: 11  MDLKSYQNQANIFVKEYILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKSYSSFAKL 70
           M++KSYQNQA  FV+ Y+LAD  +PYTSV+ GI  CK+VYDL  +  + + KSYS+  K+
Sbjct: 1   MEIKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKI 60

Query: 71  QRIEWNNRAISTIHAIFITAMALHYVFCSDLFADDQSTELITL-RNSSLSTFTLGVSVGY 129
           +RIEWNNR IST+HAIFI+ MAL++ F SDLF+D +S E +T+ RNS LSTF LGVSVGY
Sbjct: 61  KRIEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGY 120

Query: 130 FIADLGMIFWFFPSLGGYEYV 150
           F+ADLGMIFW +PSLGG EY+
Sbjct: 121 FLADLGMIFWLYPSLGGSEYI 141


>AT4G19645.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr4:10689941-10691298
           REVERSE LENGTH=268
          Length = 268

 Score =  189 bits (479), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 113/141 (80%), Gaps = 1/141 (0%)

Query: 11  MDLKSYQNQANIFVKEYILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKSYSSFAKL 70
           M++KSYQNQA  FV+ Y+LAD  +PYTSV+ GI  CK+VYDL  +  + + KSYS+  K+
Sbjct: 1   MEIKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKI 60

Query: 71  QRIEWNNRAISTIHAIFITAMALHYVFCSDLFADDQSTELITL-RNSSLSTFTLGVSVGY 129
           +RIEWNNR IST+HAIFI+ MAL++ F SDLF+D +S E +T+ RNS LSTF LGVSVGY
Sbjct: 61  KRIEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGY 120

Query: 130 FIADLGMIFWFFPSLGGYEYV 150
           F+ADLGMIFW +PSLGG EY+
Sbjct: 121 FLADLGMIFWLYPSLGGSEYI 141


>AT1G31300.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr1:11194308-11195955
           FORWARD LENGTH=278
          Length = 278

 Score =  181 bits (460), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/143 (58%), Positives = 109/143 (76%)

Query: 8   KEIMDLKSYQNQANIFVKEYILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKSYSSF 67
           + I  +KSY +QA   VK Y+LAD  +PYTSV+ GIF CK+VYDL H I  ++ K+Y   
Sbjct: 7   QTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYIIL 66

Query: 68  AKLQRIEWNNRAISTIHAIFITAMALHYVFCSDLFADDQSTELITLRNSSLSTFTLGVSV 127
            K+QRIEWNNR IST+HAIFI+AM+L++VF SDLF+D    +L+  R+S LS+  LG+S+
Sbjct: 67  TKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGISI 126

Query: 128 GYFIADLGMIFWFFPSLGGYEYV 150
           GYF+ADLGMIFW +PSLGG EY+
Sbjct: 127 GYFLADLGMIFWKYPSLGGIEYI 149


>AT1G31300.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr1:11194308-11195955
           FORWARD LENGTH=278
          Length = 278

 Score =  181 bits (460), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/143 (58%), Positives = 109/143 (76%)

Query: 8   KEIMDLKSYQNQANIFVKEYILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKSYSSF 67
           + I  +KSY +QA   VK Y+LAD  +PYTSV+ GIF CK+VYDL H I  ++ K+Y   
Sbjct: 7   QTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYIIL 66

Query: 68  AKLQRIEWNNRAISTIHAIFITAMALHYVFCSDLFADDQSTELITLRNSSLSTFTLGVSV 127
            K+QRIEWNNR IST+HAIFI+AM+L++VF SDLF+D    +L+  R+S LS+  LG+S+
Sbjct: 67  TKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGISI 126

Query: 128 GYFIADLGMIFWFFPSLGGYEYV 150
           GYF+ADLGMIFW +PSLGG EY+
Sbjct: 127 GYFLADLGMIFWKYPSLGGIEYI 149


>AT4G10360.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr4:6420679-6422108 FORWARD
           LENGTH=266
          Length = 266

 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 73/124 (58%)

Query: 27  YILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKSYSSFAKLQRIEWNNRAISTIHAI 86
           ++ +  L+   S+  G   CK+VYDL   I    F  Y       R+EWNNR  ST HA+
Sbjct: 9   FVSSRQLLLLASICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAV 68

Query: 87  FITAMALHYVFCSDLFADDQSTELITLRNSSLSTFTLGVSVGYFIADLGMIFWFFPSLGG 146
           F +  +++++  SD F ++   + +    + LS   +G+S+GYF+ADL MIFW+FP+LGG
Sbjct: 69  FTSVASIYFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTLGG 128

Query: 147 YEYV 150
            EYV
Sbjct: 129 IEYV 132


>AT4G10360.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr4:6420679-6422108 FORWARD
           LENGTH=266
          Length = 266

 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 73/124 (58%)

Query: 27  YILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKSYSSFAKLQRIEWNNRAISTIHAI 86
           ++ +  L+   S+  G   CK+VYDL   I    F  Y       R+EWNNR  ST HA+
Sbjct: 9   FVSSRQLLLLASICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAV 68

Query: 87  FITAMALHYVFCSDLFADDQSTELITLRNSSLSTFTLGVSVGYFIADLGMIFWFFPSLGG 146
           F +  +++++  SD F ++   + +    + LS   +G+S+GYF+ADL MIFW+FP+LGG
Sbjct: 69  FTSVASIYFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTLGG 128

Query: 147 YEYV 150
            EYV
Sbjct: 129 IEYV 132