Miyakogusa Predicted Gene

Lj0g3v0204759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0204759.1 Non Chatacterized Hit- tr|D8R9X3|D8R9X3_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,39.84,1e-18,APO,APO domain; APO_RNA-bind,APO domain;
EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1,NULL,CUFF.13074.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61930.2 | Symbols: APO3 | Arabidopsis thaliana protein of un...   159   7e-40
AT5G61930.1 | Symbols: APO3 | Arabidopsis thaliana protein of un...   159   7e-40
AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of un...   149   3e-37
AT5G57930.1 | Symbols: APO2, emb1629 | Arabidopsis thaliana prot...   149   4e-37
AT1G64810.2 | Symbols: APO1 | Arabidopsis thaliana protein of un...   132   7e-32
AT1G64810.1 | Symbols: APO1 | Arabidopsis thaliana protein of un...   132   8e-32
AT3G21740.1 | Symbols: APO4 | Arabidopsis thaliana protein of un...    94   2e-20

>AT5G61930.2 | Symbols: APO3 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr5:24866230-24867665
           REVERSE LENGTH=402
          Length = 402

 Score =  159 bits (401), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 90/129 (69%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           M++W +M  G  KLM+ Y   TCGYCPE+QVGPKGH+VR C+A KHQMRDG HAWQEATI
Sbjct: 273 MESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATI 332

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           +D+V P YV+H+ D   G  L + LKR+YG  PAV+E+  Q GA V   Y   MR DVV 
Sbjct: 333 DDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVY 392

Query: 121 PEMDEEKLV 129
           P+ DE  LV
Sbjct: 393 PQRDEVDLV 401



 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 7   MCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDLVPP 66
           + +G SK++       C  C EV +G +GH +R C       R   H W+   ++D+V  
Sbjct: 112 LLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLF 171

Query: 67  VYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEK 108
              +H+ D+     ++H+ +     + AV+EL  QAG  +EK
Sbjct: 172 PKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEK 213


>AT5G61930.1 | Symbols: APO3 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr5:24866230-24867665
           REVERSE LENGTH=402
          Length = 402

 Score =  159 bits (401), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 90/129 (69%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           M++W +M  G  KLM+ Y   TCGYCPE+QVGPKGH+VR C+A KHQMRDG HAWQEATI
Sbjct: 273 MESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATI 332

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           +D+V P YV+H+ D   G  L + LKR+YG  PAV+E+  Q GA V   Y   MR DVV 
Sbjct: 333 DDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVY 392

Query: 121 PEMDEEKLV 129
           P+ DE  LV
Sbjct: 393 PQRDEVDLV 401



 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 7   MCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDLVPP 66
           + +G SK++       C  C EV +G +GH +R C       R   H W+   ++D+V  
Sbjct: 112 LLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLF 171

Query: 67  VYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEK 108
              +H+ D+     ++H+ +     + AV+EL  QAG  +EK
Sbjct: 172 PKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEK 213


>AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr5:23454690-23456354
           FORWARD LENGTH=443
          Length = 443

 Score =  149 bits (377), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 94/131 (71%), Gaps = 2/131 (1%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           ++AWE+M  GA KLM  Y  + CGYCPEV VGP GH+ +NC AFKHQ R+GQH WQ A +
Sbjct: 314 LQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVL 373

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           +DL+PP YV+H+ D  +G P+  EL+ +YG  PAVVE+ AQAGA V ++Y  +MR +V +
Sbjct: 374 DDLIPPRYVWHVPD-VNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGI 432

Query: 121 P-EMDEEKLVV 130
           P  + E ++VV
Sbjct: 433 PSSVKEAEMVV 443



 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 6   KMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDLVP 65
           ++     +LM       CG+C E+ VGP GH  ++C+      R G H W  + I D++ 
Sbjct: 149 RLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIV 208

Query: 66  PVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVV 119
           P+  YH+ D+  GK + H+ +     +PAVVEL  Q G  + +  A   R+ ++
Sbjct: 209 PLEAYHLFDRL-GKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPII 261


>AT5G57930.1 | Symbols: APO2, emb1629 | Arabidopsis thaliana protein
           of unknown function (DUF794) | chr5:23454690-23456354
           FORWARD LENGTH=440
          Length = 440

 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 94/131 (71%), Gaps = 2/131 (1%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           ++AWE+M  GA KLM  Y  + CGYCPEV VGP GH+ +NC AFKHQ R+GQH WQ A +
Sbjct: 311 LQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVL 370

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           +DL+PP YV+H+ D  +G P+  EL+ +YG  PAVVE+ AQAGA V ++Y  +MR +V +
Sbjct: 371 DDLIPPRYVWHVPD-VNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGI 429

Query: 121 P-EMDEEKLVV 130
           P  + E ++VV
Sbjct: 430 PSSVKEAEMVV 440



 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 6   KMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDLVP 65
           ++     +LM       CG+C E+ VGP GH  ++C+      R G H W  + I D++ 
Sbjct: 146 RLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIV 205

Query: 66  PVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVV 119
           P+  YH+ D+  GK + H+ +     +PAVVEL  Q G  + +  A   R+ ++
Sbjct: 206 PLEAYHLFDRL-GKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPII 258


>AT1G64810.2 | Symbols: APO1 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr1:24086810-24088276
           FORWARD LENGTH=460
          Length = 460

 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 85/129 (65%), Gaps = 1/129 (0%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           M A+EK+  G +KLM  +  + CGYC EV VGP GH V+ C  FKHQ RDG+H WQ+A +
Sbjct: 332 MDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDALV 391

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           +++ PP YV+H+ D + G PL   L+R+YG  PA+VE+   +GA V + Y   MR D++V
Sbjct: 392 DEVFPPNYVWHVRDLK-GNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRLDIIV 450

Query: 121 PEMDEEKLV 129
           P+  E  +V
Sbjct: 451 PDSQEADMV 459



 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 4   WEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDL 63
           W+ +  G ++L+       C  C  V V   GH +R+C    +  R G H+W + TIND+
Sbjct: 161 WKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDV 220

Query: 64  VPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATV 106
           + PV  YH+ D   G+ + HE +  Y  +PA+VEL  QAG  +
Sbjct: 221 LIPVESYHMYD-PFGRRIKHETRFEYERIPALVELCIQAGVEI 262


>AT1G64810.1 | Symbols: APO1 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr1:24086882-24088276
           FORWARD LENGTH=436
          Length = 436

 Score =  132 bits (331), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 85/129 (65%), Gaps = 1/129 (0%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           M A+EK+  G +KLM  +  + CGYC EV VGP GH V+ C  FKHQ RDG+H WQ+A +
Sbjct: 308 MDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDALV 367

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           +++ PP YV+H+ D + G PL   L+R+YG  PA+VE+   +GA V + Y   MR D++V
Sbjct: 368 DEVFPPNYVWHVRDLK-GNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRLDIIV 426

Query: 121 PEMDEEKLV 129
           P+  E  +V
Sbjct: 427 PDSQEADMV 435



 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 4   WEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDL 63
           W+ +  G ++L+       C  C  V V   GH +R+C    +  R G H+W + TIND+
Sbjct: 137 WKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDV 196

Query: 64  VPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATV 106
           + PV  YH+ D   G+ + HE +  Y  +PA+VEL  QAG  +
Sbjct: 197 LIPVESYHMYD-PFGRRIKHETRFEYERIPALVELCIQAGVEI 238


>AT3G21740.1 | Symbols: APO4 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr3:7662542-7663638 REVERSE
           LENGTH=337
          Length = 337

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           + AWEK+  G  KL+  Y  + C  C EV VGP GH+ R C  FK++   G H W++A +
Sbjct: 207 LMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKAGV 266

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMR 115
           NDLVP   V+H    Q    LV E + YYG  PA+V L +  GA V   YA  M+
Sbjct: 267 NDLVPEKMVWH-RRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320



 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           + A + + +  + L+  +   TC +C EV VG +GH +  C+++  +  +  H W   +I
Sbjct: 66  LIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSI 125

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGA 104
           ND++ PV  YH+ +   G  + H+ +  Y  +PA++EL  QAGA
Sbjct: 126 NDILVPVESYHLHNISQGV-IRHQERFDYDRVPAILELCCQAGA 168