Miyakogusa Predicted Gene

Lj0g3v0204409.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0204409.2 Non Chatacterized Hit- tr|C5XJ90|C5XJ90_SORBI
Putative uncharacterized protein Sb03g046900
OS=Sorghu,51.65,5e-19,REGULATOR OF CHROMOSOME CONDENSATION
(RCC1),NULL; REGULATOR OF CHROMOSOME CONDENSATION,NULL;
seg,NUL,CUFF.13042.2
         (156 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12350.1 | Symbols:  | Regulator of chromosome condensation (...   194   2e-50
AT5G19420.2 | Symbols:  | Regulator of chromosome condensation (...   189   7e-49
AT5G19420.1 | Symbols:  | Regulator of chromosome condensation (...   189   7e-49
AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensat...    67   7e-12
AT5G42140.1 | Symbols:  | Regulator of chromosome condensation (...    56   8e-09

>AT5G12350.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:3995789-4000545 FORWARD LENGTH=1075
          Length = 1075

 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/156 (66%), Positives = 114/156 (73%), Gaps = 1/156 (0%)

Query: 1   MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVP 60
           MES +QV+SR  KKNKK EFNSSRVSP+P+G SQ GALNI+KS NPVFG+SKKFFSASVP
Sbjct: 764 MESMRQVDSRH-KKNKKYEFNSSRVSPIPSGSSQRGALNIAKSFNPVFGASKKFFSASVP 822

Query: 61  GSRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVDDAKRTNDSLSQEVIKLRQQVE 120
           GSRIV                             K VVDD KRTND+LSQEV+KLR QVE
Sbjct: 823 GSRIVSRATSPISRRPSPPRSTTPTPTLSGLATPKFVVDDTKRTNDNLSQEVVKLRSQVE 882

Query: 121 SLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKA 156
           SLTRKAQLQEVELERTTKQLK+A+AI  EET +CKA
Sbjct: 883 SLTRKAQLQEVELERTTKQLKEALAITNEETTRCKA 918


>AT5G19420.2 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552981 REVERSE LENGTH=1139
          Length = 1139

 Score =  189 bits (480), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 114/156 (73%), Gaps = 1/156 (0%)

Query: 1   MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVP 60
           +E  +QV+SRS KKNKK EFNSSRVSP+P+GGS  G+LNI+KS NP FGSSKKFFSASVP
Sbjct: 802 LEPMRQVDSRS-KKNKKYEFNSSRVSPIPSGGSHRGSLNITKSFNPTFGSSKKFFSASVP 860

Query: 61  GSRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVDDAKRTNDSLSQEVIKLRQQVE 120
           GSRI                              KIVVDD KR+ND+LSQEV+ LR QVE
Sbjct: 861 GSRIASRATSPISRRPSPPRSTTPTPTLSGLTTPKIVVDDTKRSNDNLSQEVVMLRSQVE 920

Query: 121 SLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKA 156
           +LTRKAQLQEVELERTTKQLK+A+AIA EE+A+CKA
Sbjct: 921 NLTRKAQLQEVELERTTKQLKEALAIASEESARCKA 956


>AT5G19420.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552866 REVERSE LENGTH=1105
          Length = 1105

 Score =  189 bits (480), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 114/156 (73%), Gaps = 1/156 (0%)

Query: 1   MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVP 60
           +E  +QV+SRS KKNKK EFNSSRVSP+P+GGS  G+LNI+KS NP FGSSKKFFSASVP
Sbjct: 768 LEPMRQVDSRS-KKNKKYEFNSSRVSPIPSGGSHRGSLNITKSFNPTFGSSKKFFSASVP 826

Query: 61  GSRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVDDAKRTNDSLSQEVIKLRQQVE 120
           GSRI                              KIVVDD KR+ND+LSQEV+ LR QVE
Sbjct: 827 GSRIASRATSPISRRPSPPRSTTPTPTLSGLTTPKIVVDDTKRSNDNLSQEVVMLRSQVE 886

Query: 121 SLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKA 156
           +LTRKAQLQEVELERTTKQLK+A+AIA EE+A+CKA
Sbjct: 887 NLTRKAQLQEVELERTTKQLKEALAIASEESARCKA 922


>AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr1:28906952-28911325 FORWARD LENGTH=1103
          Length = 1103

 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 49/60 (81%)

Query: 97  VVDDAKRTNDSLSQEVIKLRQQVESLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKA 156
           + D+ K+TN+ L+QE++KLR QV+SLT+K + QEVEL+ + K+ ++A+A+A EE+AK +A
Sbjct: 827 IADNMKKTNEILNQEIVKLRTQVDSLTQKCEFQEVELQNSVKKTQEALALAEEESAKSRA 886


>AT5G42140.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:16837547-16841640 REVERSE LENGTH=1073
          Length = 1073

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 47/60 (78%)

Query: 97  VVDDAKRTNDSLSQEVIKLRQQVESLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKA 156
           + +  K+TN+ L+QEV++LR Q ESL  + ++QE E++++ K++++A+++A EE+AK +A
Sbjct: 812 IAESLKKTNELLNQEVVRLRAQAESLRHRCEVQEFEVQKSVKKVQEAMSLAAEESAKSEA 871