Miyakogusa Predicted Gene

Lj0g3v0204409.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0204409.1 tr|D7KTY5|D7KTY5_ARALL Zinc finger protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476853
,40.43,1e-18,REGULATOR OF CHROMOSOME CONDENSATION (RCC1),NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; seg,NUL,CUFF.13042.1
         (141 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12350.1 | Symbols:  | Regulator of chromosome condensation (...   174   2e-44
AT5G19420.1 | Symbols:  | Regulator of chromosome condensation (...   167   3e-42
AT5G19420.2 | Symbols:  | Regulator of chromosome condensation (...   167   3e-42
AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensat...    52   1e-07

>AT5G12350.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:3995789-4000545 FORWARD LENGTH=1075
          Length = 1075

 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/141 (66%), Positives = 102/141 (72%), Gaps = 1/141 (0%)

Query: 1   MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVP 60
           MES +QV+SR  KKNKK EFNSSRVSP+P+G SQ GALNI+KS NPVFG+SKKFFSASVP
Sbjct: 764 MESMRQVDSRH-KKNKKYEFNSSRVSPIPSGSSQRGALNIAKSFNPVFGASKKFFSASVP 822

Query: 61  GSRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVDDAKRTNDSLSQEVIKLRQQVE 120
           GSRIV                             K VVDD KRTND+LSQEV+KLR QVE
Sbjct: 823 GSRIVSRATSPISRRPSPPRSTTPTPTLSGLATPKFVVDDTKRTNDNLSQEVVKLRSQVE 882

Query: 121 SLTRKAQLQEVELERTTKQLK 141
           SLTRKAQLQEVELERTTKQLK
Sbjct: 883 SLTRKAQLQEVELERTTKQLK 903


>AT5G19420.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552866 REVERSE LENGTH=1105
          Length = 1105

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 100/141 (70%), Gaps = 1/141 (0%)

Query: 1   MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVP 60
           +E  +QV+SRS KKNKK EFNSSRVSP+P+GGS  G+LNI+KS NP FGSSKKFFSASVP
Sbjct: 768 LEPMRQVDSRS-KKNKKYEFNSSRVSPIPSGGSHRGSLNITKSFNPTFGSSKKFFSASVP 826

Query: 61  GSRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVDDAKRTNDSLSQEVIKLRQQVE 120
           GSRI                              KIVVDD KR+ND+LSQEV+ LR QVE
Sbjct: 827 GSRIASRATSPISRRPSPPRSTTPTPTLSGLTTPKIVVDDTKRSNDNLSQEVVMLRSQVE 886

Query: 121 SLTRKAQLQEVELERTTKQLK 141
           +LTRKAQLQEVELERTTKQLK
Sbjct: 887 NLTRKAQLQEVELERTTKQLK 907


>AT5G19420.2 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552981 REVERSE LENGTH=1139
          Length = 1139

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 100/141 (70%), Gaps = 1/141 (0%)

Query: 1   MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVP 60
           +E  +QV+SRS KKNKK EFNSSRVSP+P+GGS  G+LNI+KS NP FGSSKKFFSASVP
Sbjct: 802 LEPMRQVDSRS-KKNKKYEFNSSRVSPIPSGGSHRGSLNITKSFNPTFGSSKKFFSASVP 860

Query: 61  GSRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVDDAKRTNDSLSQEVIKLRQQVE 120
           GSRI                              KIVVDD KR+ND+LSQEV+ LR QVE
Sbjct: 861 GSRIASRATSPISRRPSPPRSTTPTPTLSGLTTPKIVVDDTKRSNDNLSQEVVMLRSQVE 920

Query: 121 SLTRKAQLQEVELERTTKQLK 141
           +LTRKAQLQEVELERTTKQLK
Sbjct: 921 NLTRKAQLQEVELERTTKQLK 941


>AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr1:28906952-28911325 FORWARD LENGTH=1103
          Length = 1103

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 35/43 (81%)

Query: 97  VVDDAKRTNDSLSQEVIKLRQQVESLTRKAQLQEVELERTTKQ 139
           + D+ K+TN+ L+QE++KLR QV+SLT+K + QEVEL+ + K+
Sbjct: 827 IADNMKKTNEILNQEIVKLRTQVDSLTQKCEFQEVELQNSVKK 869