Miyakogusa Predicted Gene

Lj0g3v0204399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0204399.1 Non Chatacterized Hit- tr|F6HA19|F6HA19_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,80.77,1e-16,
,CUFF.13043.1
         (52 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12350.1 | Symbols:  | Regulator of chromosome condensation (...    77   2e-15
AT5G19420.1 | Symbols:  | Regulator of chromosome condensation (...    71   2e-13
AT5G19420.2 | Symbols:  | Regulator of chromosome condensation (...    71   2e-13

>AT5G12350.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:3995789-4000545 FORWARD LENGTH=1075
          Length = 1075

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 44/51 (86%), Gaps = 1/51 (1%)

Query: 2   VDKDDKFDSRSRNQLARFSSMESFKQVESRSSKKNKKLEFNSSRVSPVPNG 52
           +DKDDKFDSRS  QLARFS MES +QV+SR  KKNKK EFNSSRVSP+P+G
Sbjct: 744 IDKDDKFDSRSDGQLARFSLMESMRQVDSR-HKKNKKYEFNSSRVSPIPSG 793


>AT5G19420.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552866 REVERSE LENGTH=1105
          Length = 1105

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%), Gaps = 1/51 (1%)

Query: 2   VDKDDKFDSRSRNQLARFSSMESFKQVESRSSKKNKKLEFNSSRVSPVPNG 52
           +D+D+K D+RS  QLARFS +E  +QV+SR SKKNKK EFNSSRVSP+P+G
Sbjct: 748 IDRDEKLDTRSDGQLARFSLLEPMRQVDSR-SKKNKKYEFNSSRVSPIPSG 797


>AT5G19420.2 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552981 REVERSE LENGTH=1139
          Length = 1139

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%), Gaps = 1/51 (1%)

Query: 2   VDKDDKFDSRSRNQLARFSSMESFKQVESRSSKKNKKLEFNSSRVSPVPNG 52
           +D+D+K D+RS  QLARFS +E  +QV+SR SKKNKK EFNSSRVSP+P+G
Sbjct: 782 IDRDEKLDTRSDGQLARFSLLEPMRQVDSR-SKKNKKYEFNSSRVSPIPSG 831