Miyakogusa Predicted Gene
- Lj0g3v0204359.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0204359.1 Non Chatacterized Hit- tr|I1MRD6|I1MRD6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.30304 PE,94.17,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; no
description,NULL; GLOBAL TRANSCRIPTION,CUFF.13037.1
(120 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 222 5e-59
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 222 5e-59
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 221 5e-59
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 109 3e-25
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 107 2e-24
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 94 2e-20
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 94 2e-20
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 81 2e-16
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 77 2e-15
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 75 8e-15
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 75 8e-15
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 71 1e-13
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 71 1e-13
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 71 2e-13
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 71 2e-13
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 69 5e-13
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 69 5e-13
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 69 5e-13
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 66 5e-12
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 66 5e-12
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 64 2e-11
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 61 2e-10
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 59 5e-10
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 59 5e-10
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 55 1e-08
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 53 6e-08
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 50 5e-07
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 50 5e-07
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 222 bits (565), Expect = 5e-59, Method: Composition-based stats.
Identities = 101/120 (84%), Positives = 112/120 (93%)
Query: 1 MKRVEENLGSIGPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCG 60
MKRVE+NLGSIG +K+R+VHNSVMELRNICNHPYLSQLH EEV + IPKH+LPPI+RLCG
Sbjct: 1014 MKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCG 1073
Query: 61 KLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
KLEMLDR+LPKLKATDHR+LFFSTMTRLLDVME+YLTLK Y+YLRLDG TSG DRG LID
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 222 bits (565), Expect = 5e-59, Method: Composition-based stats.
Identities = 101/120 (84%), Positives = 112/120 (93%)
Query: 1 MKRVEENLGSIGPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCG 60
MKRVE+NLGSIG +K+R+VHNSVMELRNICNHPYLSQLH EEV + IPKH+LPPI+RLCG
Sbjct: 1014 MKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCG 1073
Query: 61 KLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
KLEMLDR+LPKLKATDHR+LFFSTMTRLLDVME+YLTLK Y+YLRLDG TSG DRG LID
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 221 bits (564), Expect = 5e-59, Method: Composition-based stats.
Identities = 101/120 (84%), Positives = 112/120 (93%)
Query: 1 MKRVEENLGSIGPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCG 60
MKRVE+NLGSIG +K+R+VHNSVMELRNICNHPYLSQLH EEV + IPKH+LPPI+RLCG
Sbjct: 1014 MKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCG 1073
Query: 61 KLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
KLEMLDR+LPKLKATDHR+LFFSTMTRLLDVME+YLTLK Y+YLRLDG TSG DRG LID
Sbjct: 1074 KLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALID 1133
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 70/112 (62%), Gaps = 14/112 (12%)
Query: 12 GPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHY----LPPIIRLCGKLEMLDR 67
G K++S+ N M+LR CNHPYL F+ Y P I+R GK E+LDR
Sbjct: 671 GSGKSKSLQNLTMQLRKCCNHPYL----------FVGGDYNMWKKPEIVRASGKFELLDR 720
Query: 68 ILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLI 119
+LPKL+ HRIL FS MTRL+DV+E YLTL Y+YLRLDG T + RG L+
Sbjct: 721 LLPKLRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLL 772
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 69/112 (61%), Gaps = 14/112 (12%)
Query: 12 GPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHY----LPPIIRLCGKLEMLDR 67
G K++S+ N M+LR CNHPYL F+ Y P I+R GK E+LDR
Sbjct: 653 GNGKSKSLQNLTMQLRKCCNHPYL----------FVGADYNMCKKPEIVRASGKFELLDR 702
Query: 68 ILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLI 119
+LPKLK HRIL FS MTRL+D++E YL+L Y YLRLDG T + RG L+
Sbjct: 703 LLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILL 754
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 94.4 bits (233), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 7/103 (6%)
Query: 17 RSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPKLKATD 76
R+++N MELR CNHP L+ + + K +L +R CGKL +LDRIL KL+ T
Sbjct: 1271 RTLNNRCMELRKACNHPLLNYPYFND----FSKDFL---VRSCGKLWILDRILIKLQRTG 1323
Query: 77 HRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLI 119
HR+L FSTMT+LLD++EEYL ++ Y R+DG TS DR I
Sbjct: 1324 HRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAI 1366
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 94.4 bits (233), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 7/103 (6%)
Query: 17 RSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPKLKATD 76
R+++N MELR CNHP L+ + + K +L +R CGKL +LDRIL KL+ T
Sbjct: 1272 RTLNNRCMELRKACNHPLLNYPYFND----FSKDFL---VRSCGKLWILDRILIKLQRTG 1324
Query: 77 HRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLI 119
HR+L FSTMT+LLD++EEYL ++ Y R+DG TS DR I
Sbjct: 1325 HRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAI 1367
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 18 SVHNSVMELRNICNHPYLSQLHVEEVESFI--PKHYLPPIIRLCGKLEMLDRILPKLKAT 75
S++N +MELR +C HPY+ +E VE I ++ CGKL++LD+++ KLK
Sbjct: 555 SLNNIMMELRKVCCHPYM----LEGVEPVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQ 610
Query: 76 DHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
HR+L ++ +LD++E+Y T K+++Y R+DG G +R ID
Sbjct: 611 GHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRID 655
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 18 SVHNSVMELRNICNHPYLSQLHVEEVESFIPKHY-LPPIIRLCGKLEMLDRILPKLKATD 76
S+ N V+EL+ CNHP+L + I + L II GKL +LD++L +L+ T
Sbjct: 896 SLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVILDKLLVRLRETK 955
Query: 77 HRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
HR+L FS M R+LD++ EYL+L+ +++ RLDG T R +D
Sbjct: 956 HRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMD 999
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 10 SIGPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRIL 69
S G S S+ N V++LR C+HPYL E E F +L ++ GKL +LD++L
Sbjct: 323 SSGGSNHTSLQNIVIQLRKACSHPYL--FPGIEPEPFEEGEHL---VQASGKLLVLDQLL 377
Query: 70 PKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLI 119
+L + HR+L FS MT LD++++++ L++Y Y RLDG +R I
Sbjct: 378 KRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAI 427
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 10 SIGPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRIL 69
S G S S+ N V++LR C+HPYL E E F +L ++ GKL +LD++L
Sbjct: 332 SSGGSNHTSLQNIVIQLRKACSHPYL--FPGIEPEPFEEGEHL---VQASGKLLVLDQLL 386
Query: 70 PKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLI 119
+L + HR+L FS MT LD++++++ L++Y Y RLDG +R I
Sbjct: 387 KRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAI 436
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 4 VEENLGSIGPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPK-----HYLPPIIRL 58
+ N + + + N +M+LR +C+HPYL + F P+ ++
Sbjct: 470 ITNNYQVLTKKRDAKISNVLMKLRQVCSHPYL-------LPDFEPRFEDANEAFTKLLEA 522
Query: 59 CGKLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGL 118
GKL++LD+++ KLK HR+L ++ L ++E+Y T K + Y R+DG SG +R
Sbjct: 523 SGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVR 582
Query: 119 ID 120
ID
Sbjct: 583 ID 584
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 4 VEENLGSIGPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPK-----HYLPPIIRL 58
+ N + + + N +M+LR +C+HPYL + F P+ ++
Sbjct: 429 ITNNYQVLTKKRDAKISNVLMKLRQVCSHPYL-------LPDFEPRFEDANEAFTKLLEA 481
Query: 59 CGKLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGL 118
GKL++LD+++ KLK HR+L ++ L ++E+Y T K + Y R+DG SG +R
Sbjct: 482 SGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVR 541
Query: 119 ID 120
ID
Sbjct: 542 ID 543
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 12 GPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPK 71
G + + + N M+LR CNHPYL Q E P ++ GK+ +LD++LPK
Sbjct: 451 GGGERKRLLNIAMQLRKCCNHPYLFQ----GAEPGPPYTTGDHLVTNAGKMVLLDKLLPK 506
Query: 72 LKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
LK D R+L FS MTRLLD++E+YL + Y+Y R+DG+T G++R I+
Sbjct: 507 LKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIE 555
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 12 GPSKARSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPK 71
G + + + N M+LR CNHPYL Q E P ++ GK+ +LD++LPK
Sbjct: 451 GGGERKRLLNIAMQLRKCCNHPYLFQ----GAEPGPPYTTGDHLVTNAGKMVLLDKLLPK 506
Query: 72 LKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
LK D R+L FS MTRLLD++E+YL + Y+Y R+DG+T G++R I+
Sbjct: 507 LKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIE 555
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
Query: 21 NSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPKLKATDHRIL 80
N M+LR CNHPYL Q E P +I GK+ +LD++LPKLK D R+L
Sbjct: 455 NIAMQLRKCCNHPYLFQ----GAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVL 510
Query: 81 FFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
FS MTRLLD++E+YL + Y Y R+DG+T G++R I+
Sbjct: 511 IFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIE 550
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
Query: 21 NSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPKLKATDHRIL 80
N M+LR CNHPYL Q E P +I GK+ +LD++LPKLK D R+L
Sbjct: 455 NIAMQLRKCCNHPYLFQ----GAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVL 510
Query: 81 FFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
FS MTRLLD++E+YL + Y Y R+DG+T G++R I+
Sbjct: 511 IFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIE 550
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
Query: 21 NSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPKLKATDHRIL 80
N M+LR CNHPYL Q E P +I GK+ +LD++LPKLK D R+L
Sbjct: 455 NIAMQLRKCCNHPYLFQ----GAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVL 510
Query: 81 FFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
FS MTRLLD++E+YL + Y Y R+DG+T G++R I+
Sbjct: 511 IFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIE 550
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
Query: 43 VESFIPKHYLPPIIRLCGKLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYR 102
++SF P L GKL+ LD +L +L+A +HR+L F+ MT++L+++E+Y+ ++Y+
Sbjct: 1226 MQSFDPAKLLTD----SGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYK 1281
Query: 103 YLRLDGHTSGNDRGGLI 119
YLRLDG ++ DR ++
Sbjct: 1282 YLRLDGSSTIMDRRDMV 1298
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
Query: 43 VESFIPKHYLPPIIRLCGKLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYR 102
++SF P L GKL+ LD +L +L+A +HR+L F+ MT++L+++E+Y+ ++Y+
Sbjct: 1193 MQSFDPAKLLTD----SGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYK 1248
Query: 103 YLRLDGHTSGNDRGGLI 119
YLRLDG ++ DR ++
Sbjct: 1249 YLRLDGSSTIMDRRDMV 1265
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 17 RSVHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPKLKATD 76
+S+ N VM+LR +CNHPYL E S H + I+ KL +L +L L
Sbjct: 963 QSMLNIVMQLRKVCNHPYLIPGTEPESGSLEFLHDM--RIKASAKLTLLHSMLKVLHKEG 1020
Query: 77 HRILFFSTMTRLLDVMEEYLTLK--QYRYLRLDGHTSGNDRGGLI 119
HR+L FS MT+LLD++E+YL ++ + R+DG + DR I
Sbjct: 1021 HRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADRQAAI 1065
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 59 CGKLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGL 118
CGKL+ L +L KLK HR L F+ MT++LDV+E ++ L Y Y+RLDG T +R L
Sbjct: 1074 CGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTL 1133
Query: 119 I 119
+
Sbjct: 1134 M 1134
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 19 VHNSVMELRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPKLKATDHR 78
++N V++LR CNHP L Q ++ + P + I+ CGK +L+R+L +L A +H+
Sbjct: 486 LNNLVIQLRKNCNHPDLLQGQIDGSYLYPP---VEEIVGQCGKFRLLERLLVRLFANNHK 542
Query: 79 ILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDR 115
+L FS T+LLD+M+ Y + K + R+DG ++R
Sbjct: 543 VLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDER 579
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 26 LRNICNHPYLSQLHVEEVESFIPKHYLPPIIRLCGKLEMLDRILPKLKATDHRILFFSTM 85
+R ICNHP L +E S Y P GK++++ +L K HR+L FS
Sbjct: 699 MRKICNHPDL----LEREHSHQNPDYGNP--ERSGKMKVVAEVLKVWKQQGHRVLLFSQT 752
Query: 86 TRLLDVMEEYLTLKQYRYLRLDGHTSGNDRGGLID 120
++LD++E +L +Y Y R+DG T R LID
Sbjct: 753 QQMLDILESFLVANEYSYRRMDGLTPVKQRMALID 787
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 56 IRLCGKLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDR 115
++ CGK+ L++++ + +IL FS R+LD++E++L K Y + RLDG T N R
Sbjct: 524 VKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLR 583
Query: 116 GGLID 120
L+D
Sbjct: 584 QSLVD 588
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 56 IRLCGKLEMLDRILPKLKATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGNDR 115
+ L K L +LP +K + HR+L FS T +LD++E L + Y RLDG T DR
Sbjct: 584 VMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDR 643
Query: 116 GGLID 120
++D
Sbjct: 644 QTIVD 648
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 22/129 (17%)
Query: 14 SKARSVHNSVMELRNICNHPYL----------SQLHVEEVESFIPKHYLP---------- 53
+K V + L+ +CNHP L + E F P
Sbjct: 465 AKQTKVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGD 524
Query: 54 -PIIRLCGKLEMLDRILPKLK-ATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTS 111
+ L GK+ +L R+L L+ TD RI+ S T+ LD+ + ++Y +LRLDG T+
Sbjct: 525 GAWVELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTT 584
Query: 112 GNDRGGLID 120
+ R L++
Sbjct: 585 ISKRQKLVN 593
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 22/129 (17%)
Query: 14 SKARSVHNSVMELRNICNHPYL----------SQLHVEEVESFIPKHYLP---------- 53
+K V + L+ +CNHP L + E F P
Sbjct: 467 AKQTKVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGD 526
Query: 54 -PIIRLCGKLEMLDRILPKLK-ATDHRILFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTS 111
+ L GK+ +L R+L L+ TD RI+ S T+ LD+ + ++Y +LRLDG T+
Sbjct: 527 GAWVELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTT 586
Query: 112 GNDRGGLID 120
+ R L++
Sbjct: 587 ISKRQKLVN 595