Miyakogusa Predicted Gene

Lj0g3v0203669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0203669.1 tr|A9RIG4|A9RIG4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_159272,31.87,0.22, ,CUFF.12989.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51010.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   122   1e-28

>AT3G51010.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion,
           plastid; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 24 Blast hits to 24
           proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:18946880-18948048 REVERSE LENGTH=188
          Length = 188

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 79/110 (71%), Gaps = 4/110 (3%)

Query: 40  CKLPQWLFPLRNHFHSL--TDTXXXXXXXXXXXXXXXASLRPPGPYAWVQYTPGEPILPN 97
            +LP W+ P+ NHFHSL  TDT               + L+PPGPYA+VQYTPG+PI  N
Sbjct: 52  LRLP-WI-PMANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSN 109

Query: 98  KPNEGSVKRRNEKKRVRQHRAFVLAERKKRKAQLQEANRKKSIKKVERKM 147
            PNEGSVKRRN KKR+ Q RAF+L+E+KKR+A +QEA RKK IK+VERKM
Sbjct: 110 NPNEGSVKRRNAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQVERKM 159