Miyakogusa Predicted Gene

Lj0g3v0203569.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0203569.1 tr|A9SM14|A9SM14_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,44.25,3e-16,coiled-coil,NULL; seg,NULL,CUFF.12971.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78915.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   140   4e-34
AT1G78915.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   130   4e-31
AT1G78915.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   127   3e-30

>AT1G78915.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:29667729-29671081 REVERSE
           LENGTH=385
          Length = 385

 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 118/198 (59%), Gaps = 10/198 (5%)

Query: 1   MWMTTMSIRS----SGLLWFRINCCDSKTGRGFGENRIKTNKADKGSVSPQRGSTSKQSR 56
           M MT  +  S    S LL FRI C DS   RGFG     + K +K     QR S+SKQS 
Sbjct: 1   MLMTLAATTSVSFNSKLLLFRIRCSDSNPKRGFG-----SKKEEKDPALQQRKSSSKQSV 55

Query: 57  SVPSQAPLLSSQVDRKLRNSSLDVDFEERLKEVRRSAIEQKKAEDKKEFGAIDYDEPISS 116
           SVP +AP L++Q + K    S D+DF+ERL+ +RRSA+EQKK E  KEFG IDYD P+ S
Sbjct: 56  SVPRKAPGLNTQFEGK-SGRSFDIDFDERLENIRRSALEQKKTEVVKEFGPIDYDAPVKS 114

Query: 117 DKKTIXXXXXXXXXXXXXXXXXXXXXXXXXPSGSVSPNEDSAVVKSKLSEEDKAALESRL 176
           D+KTI                         P+GS SP +++ VVK+++SEE+KA L+ RL
Sbjct: 115 DQKTIGLGTKVGVGIAVVVFGLVFALGDFLPTGSDSPTKNTTVVKNQISEEEKATLQQRL 174

Query: 177 KEFEATLSNSPRDPTALE 194
           KEFE TL+ +P+D  ALE
Sbjct: 175 KEFETTLNGTPQDQAALE 192


>AT1G78915.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:29667729-29671081 REVERSE
           LENGTH=402
          Length = 402

 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 118/215 (54%), Gaps = 27/215 (12%)

Query: 1   MWMTTMSIRS----SGLLWFRINCCDSKTGRGFGENRIKTNKADKGSVSPQRGSTSKQSR 56
           M MT  +  S    S LL FRI C DS   RGFG     + K +K     QR S+SKQS 
Sbjct: 1   MLMTLAATTSVSFNSKLLLFRIRCSDSNPKRGFG-----SKKEEKDPALQQRKSSSKQSV 55

Query: 57  SVPSQAPLLSSQVDRKLRNSSLDVDFEERLKEVRRSAIEQKKAEDKKEFGAIDYDEPISS 116
           SVP +AP L++Q + K    S D+DF+ERL+ +RRSA+EQKK E  KEFG IDYD P+ S
Sbjct: 56  SVPRKAPGLNTQFEGK-SGRSFDIDFDERLENIRRSALEQKKTEVVKEFGPIDYDAPVKS 114

Query: 117 DKKTIXXXXXXXXXXXXXXXXXXXXXXXXXPSGSV-----------------SPNEDSAV 159
           D+KTI                         P+G +                 SP +++ V
Sbjct: 115 DQKTIGLGTKVGVGIAVVVFGLVFALGDFLPTGRISWVGFRNFTFLSYQVIDSPTKNTTV 174

Query: 160 VKSKLSEEDKAALESRLKEFEATLSNSPRDPTALE 194
           VK+++SEE+KA L+ RLKEFE TL+ +P+D  ALE
Sbjct: 175 VKNQISEEEKATLQQRLKEFETTLNGTPQDQAALE 209


>AT1G78915.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:29667729-29671081 REVERSE
           LENGTH=405
          Length = 405

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/218 (41%), Positives = 117/218 (53%), Gaps = 30/218 (13%)

Query: 1   MWMTTMSIRS----SGLLWFRINCCDSKTGRGFGENRIKTNKADKGSVSPQRGSTSKQSR 56
           M MT  +  S    S LL FRI C DS   RGFG     + K +K     QR S+SKQS 
Sbjct: 1   MLMTLAATTSVSFNSKLLLFRIRCSDSNPKRGFG-----SKKEEKDPALQQRKSSSKQSV 55

Query: 57  SVPSQAPLLSSQVDRKLRNSSLDVDFEERLKEVRRSAIEQKKAEDKKEFGAIDYDEPISS 116
           SVP +AP L++Q + K    S D+DF+ERL+ +RRSA+EQKK E  KEFG IDYD P+ S
Sbjct: 56  SVPRKAPGLNTQFEGK-SGRSFDIDFDERLENIRRSALEQKKTEVVKEFGPIDYDAPVKS 114

Query: 117 DKKTIXXXXXXXXXXXXXXXXXXXXXXXXXPSGSV--------------------SPNED 156
           D+KTI                         P+G                      SP ++
Sbjct: 115 DQKTIGLGTKVGVGIAVVVFGLVFALGDFLPTGRCVKISWVGFRNFTFLSYQVIDSPTKN 174

Query: 157 SAVVKSKLSEEDKAALESRLKEFEATLSNSPRDPTALE 194
           + VVK+++SEE+KA L+ RLKEFE TL+ +P+D  ALE
Sbjct: 175 TTVVKNQISEEEKATLQQRLKEFETTLNGTPQDQAALE 212