Miyakogusa Predicted Gene
- Lj0g3v0203189.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0203189.1 Non Chatacterized Hit- tr|D7MIC5|D7MIC5_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,41.22,3e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.12941.1
(129 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06840.1 | Symbols: | Leucine-rich repeat protein kinase fam... 114 2e-26
AT5G37450.1 | Symbols: | Leucine-rich repeat protein kinase fam... 93 4e-20
AT5G01950.1 | Symbols: | Leucine-rich repeat protein kinase fam... 77 3e-15
AT3G53590.1 | Symbols: | Leucine-rich repeat protein kinase fam... 61 2e-10
AT5G01890.1 | Symbols: | Leucine-rich receptor-like protein kin... 47 2e-06
AT3G49060.2 | Symbols: | U-box domain-containing protein kinase... 46 5e-06
AT3G49060.1 | Symbols: | U-box domain-containing protein kinase... 46 6e-06
>AT1G06840.1 | Symbols: | Leucine-rich repeat protein kinase family
protein | chr1:2097854-2103208 REVERSE LENGTH=953
Length = 953
Score = 114 bits (285), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/128 (45%), Positives = 77/128 (60%)
Query: 2 TGRQPIIHGENIIRQVNMAHQSGRIFAVIDERMGSYPIEYVEKFFMLALNCCKDAPNDRP 61
TG QPI HG+NI+R++N+A++SG I + +D+RM S P E +EKF LAL CC++ + RP
Sbjct: 826 TGMQPITHGKNIVREINIAYESGSILSTVDKRMSSVPDECLEKFATLALRCCREETDARP 885
Query: 62 NMVEVVRELEKIWCMMPESNGKEVEYPTSDFETICXXXXXXXXXXXXFISDVSGSDLVSG 121
+M EVVRELE IW +MPES+ + + DVSGSDLVSG
Sbjct: 886 SMAEVVRELEIIWELMPESHVAKTADLSETMTHPSSSSNSSIMKHHYTSMDVSGSDLVSG 945
Query: 122 AIPINKPR 129
P PR
Sbjct: 946 VAPSVAPR 953
>AT5G37450.1 | Symbols: | Leucine-rich repeat protein kinase family
protein | chr5:14852801-14857098 REVERSE LENGTH=935
Length = 935
Score = 93.2 bits (230), Expect = 4e-20, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 31/145 (21%)
Query: 1 MTGRQPIIHGENIIRQVNMAHQSGRIFAVIDERMGSYPIEYVEKFFMLALNCCKDAPNDR 60
+TG +PI HG NI+R+VN A +G + +VID MG Y E V++F LA+ CC+D P R
Sbjct: 806 LTGMRPISHGRNIVREVNEACDAGMMMSVIDRSMGQYSEECVKRFMELAIRCCQDNPEAR 865
Query: 61 PNMVEVVRELEKIWCMMPES----------------NGKEVEYPTSDFETICXXXXXXXX 104
P M+E+VRELE I+ ++P+ +G V P S + T
Sbjct: 866 PWMLEIVRELENIYGLIPKEEKPYSSPSVQSSASGMSGFAVASPRSSYTT---------- 915
Query: 105 XXXXFISDVSGSDLVSGAIPINKPR 129
S+ + + LVSG IP PR
Sbjct: 916 -----FSEFTANQLVSGVIPSIAPR 935
>AT5G01950.1 | Symbols: | Leucine-rich repeat protein kinase family
protein | chr5:365040-369532 REVERSE LENGTH=951
Length = 951
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 1 MTGRQPIIHGENIIRQVNMAHQSGRIFAVIDERMGSYPIEYVEKFFMLALNCCKDAPNDR 60
+TG I HG+NI+R+V A Q + ++ID+RM + +E VEKF LAL C D+P R
Sbjct: 826 LTGMHAISHGKNIVREVKTAEQRDMMVSLIDKRMEPWSMESVEKFAALALRCSHDSPEMR 885
Query: 61 PNMVEVVRELEKIWCMMPE 79
P M EVV+ELE + P+
Sbjct: 886 PGMAEVVKELESLLQASPD 904
>AT3G53590.1 | Symbols: | Leucine-rich repeat protein kinase family
protein | chr3:19867379-19871651 REVERSE LENGTH=783
Length = 783
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 1 MTGRQPIIHGENIIRQV------------------NMAHQSGRIFAVIDERMGSYPIEYV 42
+TG P G +IIR+V A++ G + +V D RMG + V
Sbjct: 642 LTGMHPFFEGTHIIREVLFLTELPRRSDNGVAKSVRTANECGTVLSVADSRMGQCSPDKV 701
Query: 43 EKFFMLALNCCKDAPNDRPNMVEVVRELEKIWCMMPESNGKEVEYPTSDFETICXXXXXX 102
+K LAL CC+D P RP M +VV+ELE I C + +E E + + +C
Sbjct: 702 KKLAELALWCCEDRPETRPPMSKVVKELEGI-C----QSVREPEMFSETTKLLCSKTSPS 756
Query: 103 XXXXXXFISDVSGSDLVSGAIPINKPR 129
+S + GS+L SG KPR
Sbjct: 757 SSSVPSPLSLLPGSNLDSGFFHAVKPR 783
>AT5G01890.1 | Symbols: | Leucine-rich receptor-like protein kinase
family protein | chr5:341661-344650 REVERSE LENGTH=967
Length = 967
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 1 MTGRQPIIHGEN----IIRQVNMAHQSGRIFAVIDERM-GSYPIEYVEKFFMLALNCCKD 55
+TG++P+ + E+ + V + GR+ +D R+ G++P E L L C
Sbjct: 882 VTGKRPVEYAEDDVVVLCETVREGLEEGRVEECVDPRLRGNFPAEEAIPVIKLGLVCGSQ 941
Query: 56 APNDRPNMVEVVRELEKIWC 75
P++RP M EVV+ LE I C
Sbjct: 942 VPSNRPEMEEVVKILELIQC 961
>AT3G49060.2 | Symbols: | U-box domain-containing protein kinase
family protein | chr3:18187054-18191878 REVERSE
LENGTH=795
Length = 795
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MTGRQPIIHGENIIRQVNMAHQSGRIFAVIDERMGSYPIEYVEKFFMLALNCCKDAPNDR 60
+ R+P+ I+R V A ++ I AV+D G +P+ +K +A+ CCK P +R
Sbjct: 634 LLTRRPV---SGILRDVKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPMNR 690
Query: 61 PNMVEVVRELEKI 73
P++ V+R ++++
Sbjct: 691 PDLAVVLRFIDRM 703
>AT3G49060.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr3:18187386-18191878 REVERSE
LENGTH=805
Length = 805
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MTGRQPIIHGENIIRQVNMAHQSGRIFAVIDERMGSYPIEYVEKFFMLALNCCKDAPNDR 60
+ R+P+ I+R V A ++ I AV+D G +P+ +K +A+ CCK P +R
Sbjct: 644 LLTRRPV---SGILRDVKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPMNR 700
Query: 61 PNMVEVVRELEKI 73
P++ V+R ++++
Sbjct: 701 PDLAVVLRFIDRM 713