Miyakogusa Predicted Gene

Lj0g3v0202129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0202129.1 tr|F2CSJ8|F2CSJ8_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,56.79,5e-19,seg,NULL; Phosphofructokinase,Phosphofructokinase
domain; no description,NULL,BW621562.path1.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76550.1 | Symbols:  | Phosphofructokinase family protein | c...   179   3e-46
AT1G20950.1 | Symbols:  | Phosphofructokinase family protein | c...   173   2e-44
AT1G12000.1 | Symbols:  | Phosphofructokinase family protein | c...    52   1e-07

>AT1G76550.1 | Symbols:  | Phosphofructokinase family protein |
           chr1:28722900-28726929 REVERSE LENGTH=617
          Length = 617

 Score =  179 bits (454), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 81/109 (74%), Positives = 87/109 (79%)

Query: 1   MDSDYGIPRELSDLQKLRSLYQPELPPCLQGTTVRVEFGXXXXXXXXXXXXXISRAFPHT 60
           MDSD+GIPRELS LQ+LRS Y PELPPCLQGTTVRVE G             I+RAFPHT
Sbjct: 1   MDSDFGIPRELSPLQQLRSQYHPELPPCLQGTTVRVELGDGTTVAKAGDAHIIARAFPHT 60

Query: 61  YGHPLAHFLRATAKVPDAQIITEHPPMRVGIVFCGRQSPGGHNVIWGLH 109
            G PLAHFLRATAKV DAQIITEHP  RVGIVFCGRQ+PGGHNV+WGL+
Sbjct: 61  LGQPLAHFLRATAKVADAQIITEHPVKRVGIVFCGRQAPGGHNVVWGLY 109


>AT1G20950.1 | Symbols:  | Phosphofructokinase family protein |
           chr1:7297467-7301336 REVERSE LENGTH=614
          Length = 614

 Score =  173 bits (438), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/108 (72%), Positives = 86/108 (79%)

Query: 1   MDSDYGIPRELSDLQKLRSLYQPELPPCLQGTTVRVEFGXXXXXXXXXXXXXISRAFPHT 60
           MDSD+GIPRELS LQ+LRS Y+PELPPCLQGTTVRVE G             ++RAFPHT
Sbjct: 1   MDSDFGIPRELSPLQQLRSQYKPELPPCLQGTTVRVELGDGTTVAEAADSHTMARAFPHT 60

Query: 61  YGHPLAHFLRATAKVPDAQIITEHPPMRVGIVFCGRQSPGGHNVIWGL 108
            G PLAHFLR TA+VPDA IITE P +RVGIVFCGRQ+PGGHNVIWGL
Sbjct: 61  LGQPLAHFLRETAQVPDAHIITELPSVRVGIVFCGRQAPGGHNVIWGL 108


>AT1G12000.1 | Symbols:  | Phosphofructokinase family protein |
           chr1:4050159-4053727 REVERSE LENGTH=566
          Length = 566

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 53  ISRAFPHTYGHPLAHFLRATAKVPDAQIITEHPPMRVGIVFCGRQSPGGHNVIWGL 108
           I++ FP  YG P      + A VPD    +  P +++G+V  G Q+PGGHNVI GL
Sbjct: 68  IAKLFPGLYGQP------SVAVVPDQDAPSSAPKLKIGVVLSGGQAPGGHNVISGL 117