Miyakogusa Predicted Gene

Lj0g3v0201619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201619.1 tr|B9SC90|B9SC90_RICCO DNA polymerase OS=Ricinus
communis GN=RCOM_1409950 PE=3 SV=1,93.33,0,no description,DNA
polymerase, palm domain; seg,NULL; coiled-coil,NULL; DNA POLYMERASE
ALPHA CATALYT,CUFF.12809.1
         (166 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases | chr...   239   9e-64
AT5G63960.2 | Symbols: EMB2780 | DNA binding;nucleotide binding;...    53   1e-07
AT5G63960.1 | Symbols: EMB2780 | DNA binding;nucleotide binding;...    52   1e-07

>AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases |
            chr5:26776994-26785104 FORWARD LENGTH=1524
          Length = 1524

 Score =  239 bits (609), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 117/165 (70%), Positives = 134/165 (81%), Gaps = 1/165 (0%)

Query: 1    MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDD 60
            MYGCLGFSNSRFYAKP+AELITLQGR+ILQ TVDLVQN+LNLEVIYGDTDSIMI+SGLDD
Sbjct: 999  MYGCLGFSNSRFYAKPLAELITLQGRDILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDD 1058

Query: 61   IVKAKAMAGKVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGSTPYEVIER 120
            I + KA+  KVIQEVNKKY+CL+ID DG                  QFKDG  P E IER
Sbjct: 1059 IEEVKAIKSKVIQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKLQFKDGK-PCEDIER 1117

Query: 121  KGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKV 165
            KG+D+VRRDWSLL+KE+GD CL++IL GGSCEDVVE+IH+ LMK+
Sbjct: 1118 KGVDMVRRDWSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKI 1162


>AT5G63960.2 | Symbols: EMB2780 | DNA binding;nucleotide
           binding;nucleic acid binding;DNA-directed DNA
           polymerases;DNA-directed DNA polymerases |
           chr5:25599597-25606672 FORWARD LENGTH=1112
          Length = 1112

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 16/176 (9%)

Query: 1   MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 52
           +YG  G +  +     I+  +T  GR++++ T  LV++          N EVIYGDTDS+
Sbjct: 715 VYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSV 774

Query: 53  MIYSGLDDIVKAKAMAGKVIQEVNKKY-KCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 111
           M+  G+ D+  A  +  +  + ++  + K ++++ +                        
Sbjct: 775 MVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINKKRYAGL---LWTN 831

Query: 112 STPYEVIERKGLDIVRRDWSLLAKELGDFCLTQIL----SGGSCEDVVESIHSSLM 163
              ++ ++ KG++ VRRD  LL K L    L +IL      G+ E+V ++I   LM
Sbjct: 832 PQQFDKMDTKGIETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENVKKTISDLLM 887


>AT5G63960.1 | Symbols: EMB2780 | DNA binding;nucleotide
           binding;nucleic acid binding;DNA-directed DNA
           polymerases;DNA-directed DNA polymerases |
           chr5:25599597-25606672 FORWARD LENGTH=1095
          Length = 1095

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 16/176 (9%)

Query: 1   MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 52
           +YG  G +  +     I+  +T  GR++++ T  LV++          N EVIYGDTDS+
Sbjct: 698 VYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSV 757

Query: 53  MIYSGLDDIVKAKAMAGKVIQEVNKKY-KCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 111
           M+  G+ D+  A  +  +  + ++  + K ++++ +                        
Sbjct: 758 MVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINKKRYAGL---LWTN 814

Query: 112 STPYEVIERKGLDIVRRDWSLLAKELGDFCLTQIL----SGGSCEDVVESIHSSLM 163
              ++ ++ KG++ VRRD  LL K L    L +IL      G+ E+V ++I   LM
Sbjct: 815 PQQFDKMDTKGIETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENVKKTISDLLM 870