Miyakogusa Predicted Gene

Lj0g3v0201579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201579.1 Non Chatacterized Hit- tr|C5YB39|C5YB39_SORBI
Putative uncharacterized protein Sb06g034000
OS=Sorghu,35.37,4e-18,seg,NULL,CUFF.12806.1
         (256 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | c...    81   7e-16

>AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 |
           chr4:15145936-15152939 FORWARD LENGTH=1883
          Length = 1883

 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 122/258 (47%), Gaps = 52/258 (20%)

Query: 1   MLKTYSTALLAVCLTXXXXXXXXXXXLTSGLSAKLMRYLRLRVLGETSGSQIDTSHLTKS 60
           MLKTYST LLA+ L            LTSGLSAKLM YLR+RVL E S S+I   H T++
Sbjct: 189 MLKTYSTGLLALSLASRGQIVEDV--LTSGLSAKLMHYLRVRVLKEPSTSRI---HTTET 243

Query: 61  RHSSGDISVRGKDDGRSRFRQQL--LESSHLDDDARVIDERSLDDLTLDRGQDRSISGQT 118
           +H    +S++ K++GRSR R+ +  +E  H+              L  D G++    GQT
Sbjct: 244 KH----VSLKTKEEGRSRVRKIVDTVEGDHV--------------LETDSGREM---GQT 282

Query: 119 CQEISWIDGEPPYWLNEGADICEVDSDGEERWHCRDICDGRIKYGEQXXXXXXXXXXXXX 178
                  D +P     +G    E + DG + ++   + D +IK G+              
Sbjct: 283 -------DVQP-----DG----EFEIDGRDVFNVSGVVDCKIKPGDD---NSVRDDPSRH 323

Query: 179 XXXXXXXXXKGTVNDGTVESELVLSPPGSGSRLGQGHSVRDRSIVRNADVRRVPDSKKTL 238
                    +G V++G  ++E++L+ P  G  L     VRDR + + +D R   D    L
Sbjct: 324 RLNRSKSRGRGRVHEGAPDTEVLLASPRLGRLL-----VRDRDLSKISDGRNAEDVTVCL 378

Query: 239 ARNTSEDSVFERKDNDEC 256
            +  S     ER+DNDEC
Sbjct: 379 GKMKSGIMEIEREDNDEC 396