Miyakogusa Predicted Gene

Lj0g3v0201389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201389.1 Non Chatacterized Hit- tr|I3SKZ0|I3SKZ0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.76,0,FIBRILLARIN,Fibrillarin; FIBRILLARIN,Fibrillarin,
conserved site; RRNA 2-O-METHYLTRANSFERASE FIBRILL,CUFF.12805.1
         (204 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25630.1 | Symbols: FIB2, ATFIB2 | fibrillarin 2 | chr4:13074...   298   2e-81
AT5G52470.1 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibri...   297   3e-81
AT5G52470.2 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibri...   295   1e-80
AT5G52490.1 | Symbols:  | Fibrillarin family protein | chr5:2129...   243   9e-65

>AT4G25630.1 | Symbols: FIB2, ATFIB2 | fibrillarin 2 |
           chr4:13074239-13076205 FORWARD LENGTH=320
          Length = 320

 Score =  298 bits (762), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 144/157 (91%), Positives = 151/157 (96%), Gaps = 1/157 (0%)

Query: 47  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 106
           S+V+VEPHRH G+FIAKG KEDALVTKNLVPGEAVYNEKR++VQ EDGTK EYRVWNPFR
Sbjct: 78  SKVIVEPHRHAGVFIAKG-KEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFR 136

Query: 107 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 166
           SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLV
Sbjct: 137 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLV 196

Query: 167 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVA 203
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVA
Sbjct: 197 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 233


>AT5G52470.1 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 |
           fibrillarin 1 | chr5:21294290-21296509 FORWARD
           LENGTH=308
          Length = 308

 Score =  297 bits (761), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 144/157 (91%), Positives = 151/157 (96%), Gaps = 1/157 (0%)

Query: 47  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 106
           S+V+VEPHRH G+FIAKG KEDALVTKNLVPGEAVYNEKR++VQ EDGTK EYRVWNPFR
Sbjct: 67  SKVIVEPHRHAGVFIAKG-KEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFR 125

Query: 107 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 166
           SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLV
Sbjct: 126 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLV 185

Query: 167 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVA 203
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVA
Sbjct: 186 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222


>AT5G52470.2 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 |
           fibrillarin 1 | chr5:21294290-21296409 FORWARD
           LENGTH=273
          Length = 273

 Score =  295 bits (755), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/157 (91%), Positives = 151/157 (96%), Gaps = 1/157 (0%)

Query: 47  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 106
           S+V+VEPHRH G+FIAKG KEDALVTKNLVPGEAVYNEKR++VQ EDGTK EYRVWNPFR
Sbjct: 67  SKVIVEPHRHAGVFIAKG-KEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFR 125

Query: 107 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 166
           SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLV
Sbjct: 126 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLV 185

Query: 167 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVA 203
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVA
Sbjct: 186 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222


>AT5G52490.1 | Symbols:  | Fibrillarin family protein |
           chr5:21298857-21300239 FORWARD LENGTH=292
          Length = 292

 Score =  243 bits (619), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 132/156 (84%), Gaps = 1/156 (0%)

Query: 47  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 106
           S+V+V PHRH G+F+AK  K DALVTKNLVPGE +YNEKR+ VQ ED +  EYRVWNP R
Sbjct: 57  SKVLVTPHRHAGVFVAKS-KADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVWNPHR 115

Query: 107 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 166
           SKLA AI  GVDNIWIKPG KVLYLGA+SG TVSHVSDIVGP G VYAVE S   G+ L+
Sbjct: 116 SKLADAITTGVDNIWIKPGVKVLYLGASSGYTVSHVSDIVGPEGCVYAVEHSDICGKVLM 175

Query: 167 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDV 202
           NMA+KRTNVIPIIEDARHPAKYRMLVGMVD++FSDV
Sbjct: 176 NMAEKRTNVIPIIEDARHPAKYRMLVGMVDIIFSDV 211