Miyakogusa Predicted Gene

Lj0g3v0201119.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201119.2 tr|C7FD52|C7FD52_ARALP At4g14180-like protein
(Fragment) OS=Arabidopsis lyrata subsp. petraea PE=4
S,52,0.000000000000003,seg,NULL,CUFF.12769.2
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14180.1 | Symbols: AtPRD1, PRD1 | putative recombination ini...   154   3e-38

>AT4G14180.1 | Symbols: AtPRD1, PRD1 | putative recombination
            initiation defect 1 | chr4:8178330-8183515 FORWARD
            LENGTH=1268
          Length = 1268

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 112/164 (68%)

Query: 2    SIRSILEGLVFYSDLRVATNCALCLSMLMRWENHAEETKLLGHSSWCRLVIEEMTVSLAA 61
            S++++L GLVF  D+RVATN ALCLSM++ WE+    T++L  SSW R + EEM+VSLA 
Sbjct: 1030 SMKAVLGGLVFCDDIRVATNSALCLSMILGWEDMEGRTEMLKTSSWYRFIAEEMSVSLAM 1089

Query: 62   PSLASQSFMESQRPAVXXXXXXXXXXXXPQWVRYVFNNSCISGILENIAATNLSSEILVL 121
            P  AS +++   +PAV            P W+R VF+ SCIS +++N+   N+S EI++L
Sbjct: 1090 PCSASSTYVNHHKPAVYLTVAMLRLKNKPVWLRTVFDESCISSMIQNLNGINISREIVIL 1149

Query: 122  FRELLKSDFLSTEQITTINQILQECRKRMYTNNAQEGLPKEPVK 165
            FREL++++ L+++Q+T +++  QECRK+M+ N  ++   +E V+
Sbjct: 1150 FRELMQAELLNSQQVTKLDRAFQECRKQMHRNGTRDETVEEQVQ 1193