Miyakogusa Predicted Gene

Lj0g3v0201089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201089.1 Non Chatacterized Hit- tr|A6MZP2|A6MZP2_ORYSI
Putative uncharacterized protein (Fragment) OS=Oryza s,65.15,6e-19,GB
DEF: HYPOTHETICAL PROTEIN,NULL; FAMILY NOT NAMED,NULL; seg,NULL;
MMgT,Magnesium transporter,CUFF.12786.1
         (106 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03345.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   138   8e-34
AT5G03345.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   130   1e-31

>AT5G03345.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: Magnesium transporter (InterPro:IPR018937);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:814196-815478 FORWARD
           LENGTH=104
          Length = 104

 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 72/88 (81%)

Query: 17  HAAYSTIQYRALLKITEEEFSGPPLNVVIELTLGLVICMWAALTVPGNFLSIQPDSEENR 76
           HAAYSTIQYR LLKI EEEFS PP+NV++EL +GL +CMWAALT PG FLSI PDS+ENR
Sbjct: 17  HAAYSTIQYRGLLKIMEEEFSRPPINVILELIIGLALCMWAALTFPGKFLSIHPDSDENR 76

Query: 77  IVSLPANLDFMIFNHRGKVFPVETNAKL 104
            V LP N DFMIFNHRG++FP + + K 
Sbjct: 77  AVFLPDNSDFMIFNHRGRLFPPQIDMKF 104


>AT5G03345.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: Magnesium transporter (InterPro:IPR018937);
           Has 155 Blast hits to 155 proteins in 63 species: Archae
           - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants -
           44; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
           BLink). | chr5:814196-815478 FORWARD LENGTH=104
          Length = 104

 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 70/88 (79%)

Query: 17  HAAYSTIQYRALLKITEEEFSGPPLNVVIELTLGLVICMWAALTVPGNFLSIQPDSEENR 76
           HAAYSTIQ   LLKI EEEFS PP+NV++EL +GL +CMWAALT PG FLSI PDS+ENR
Sbjct: 17  HAAYSTIQCIGLLKIMEEEFSRPPINVILELIIGLALCMWAALTFPGKFLSIHPDSDENR 76

Query: 77  IVSLPANLDFMIFNHRGKVFPVETNAKL 104
            V LP N DFMIFNHRG++FP + + K 
Sbjct: 77  AVFLPDNSDFMIFNHRGRLFPPQIDMKF 104