Miyakogusa Predicted Gene

Lj0g3v0200439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0200439.1 tr|Q9FLE0|Q9FLE0_ARATH GTP-binding protein-like
OS=Arabidopsis thaliana GN=At5g39960 PE=4 SV=1,80,5e-19,MMR_HSR1,GTP
binding domain; no description,NULL; P-loop containing nucleoside
triphosphate hydrolas,CUFF.12715.1
         (121 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39960.1 | Symbols:  | GTP binding;GTP binding | chr5:1599419...   113   3e-26
AT3G12080.2 | Symbols: emb2738 | GTP-binding family protein | ch...    55   9e-09
AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein | ch...    55   1e-08

>AT5G39960.1 | Symbols:  | GTP binding;GTP binding |
           chr5:15994195-15996820 FORWARD LENGTH=621
          Length = 621

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 64/69 (92%)

Query: 46  LDFTQLPISRLPTIIIIGRPNVGKSALFNRLIQRREALVYNTPEDHVTRDIREGVAKLGN 105
           +DFT++  + LPT++++GRPNVGKSAL+NRLI+RREALVYNTP+DHVTRDIREG+AKLG+
Sbjct: 107 IDFTKIDANLLPTVMLMGRPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLGD 166

Query: 106 LRFRVLDPS 114
           LRF VLD +
Sbjct: 167 LRFNVLDSA 175


>AT3G12080.2 | Symbols: emb2738 | GTP-binding family protein |
           chr3:3847851-3851677 FORWARD LENGTH=587
          Length = 587

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 40  KYKPLDLDFTQLPISRLPTIIIIGRPNVGKSALFNRLIQRREALVYNTPEDHVTRDIREG 99
           K K L  +  Q+P   L  + I+GRPNVGKSALFNRL+    A+V + P   VTRD   G
Sbjct: 142 KGKRLAKNTQQIPEHLLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEP--GVTRDRLYG 199

Query: 100 VAKLGNLRFRVLD 112
            +  G+  F V+D
Sbjct: 200 RSYWGDQEFVVVD 212


>AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein |
           chr3:3847851-3851980 FORWARD LENGTH=663
          Length = 663

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 40  KYKPLDLDFTQLPISRLPTIIIIGRPNVGKSALFNRLIQRREALVYNTPEDHVTRDIREG 99
           K K L  +  Q+P   L  + I+GRPNVGKSALFNRL+    A+V + P   VTRD   G
Sbjct: 142 KGKRLAKNTQQIPEHLLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEP--GVTRDRLYG 199

Query: 100 VAKLGNLRFRVLD 112
            +  G+  F V+D
Sbjct: 200 RSYWGDQEFVVVD 212