Miyakogusa Predicted Gene
- Lj0g3v0200139.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0200139.1 Non Chatacterized Hit- tr|G7JI35|G7JI35_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,37.63,2e-18,seg,NULL; Leucine-rich repeat - CC
(cysteine-containin,Leucine-rich repeat, cysteine-containing
subt,CUFF.12691.1
(559 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80630.1 | Symbols: | RNI-like superfamily protein | chr1:30... 301 7e-82
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 74 3e-13
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 66 6e-11
AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1... 64 3e-10
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protei... 59 7e-09
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 58 2e-08
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch... 58 2e-08
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr... 58 2e-08
AT5G01720.1 | Symbols: | RNI-like superfamily protein | chr5:26... 52 8e-07
AT3G58530.1 | Symbols: | RNI-like superfamily protein | chr3:21... 52 1e-06
AT3G07550.2 | Symbols: | RNI-like superfamily protein | chr3:24... 50 3e-06
AT3G07550.1 | Symbols: | RNI-like superfamily protein | chr3:24... 50 3e-06
>AT1G80630.1 | Symbols: | RNI-like superfamily protein |
chr1:30308879-30310615 REVERSE LENGTH=578
Length = 578
Score = 301 bits (772), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 218/556 (39%), Positives = 307/556 (55%), Gaps = 30/556 (5%)
Query: 5 DFPEECWELVFRFLSHT--HDLESLSLVCKQFLSITNHLQSSLKIYDKTILLLPNLFSRF 62
D PEECWEL+ + + LES+SLV FLSITN ++S+ + D+ + LL RF
Sbjct: 2 DLPEECWELICKAIDEDDYRFLESVSLVSTLFLSITNRVRSTFVVTDRAVPLLNRHLLRF 61
Query: 63 SRLKTIDLSNFNGDLKVLLHQIXXXXXXXXXXXXXXXRTIPIDGLRELGSKMKNFKVLTC 122
LK I S+F DL +L Q+ R P +MKN K L C
Sbjct: 62 RNLKRIRFSDFTQDLNSILLQVSRSGLDFESVDVSQTRYFP-------DFEMKNVKELKC 114
Query: 123 SNIGSLQDGHLVVIAYCFPFLEELDISFP--LDSQASDFGILRLASLLENLRKINLSGNH 180
+G D LV I FP LE+LDIS+P S+ SD G++ L+S L+ L KIN+SGN
Sbjct: 115 YGVGGFSDSDLVSIGVNFPLLEKLDISYPNSSPSRVSDSGVIELSSNLKGLLKINISGNS 174
Query: 181 LITDKSLFSLCQNYTSMEQISFVTCFKITQVGNASAIRLRPSLSSISFNIEKKRIHGPGL 240
ITDKSL +L QN + +I F C I+ + LR S N+E I+G GL
Sbjct: 175 FITDKSLIALSQNCLLLREIIFRDCDFISS--DCIKFVLRNSR-----NLESLAINGIGL 227
Query: 241 TPLPINLDLIDSFKSLKRLTAVDLSNSFISDEFLVSIAEGSGGGNLLNKLILQDCCNCTF 300
P L D+F + LT +DLS+SF+SD+ L IA L KL+L DC TF
Sbjct: 228 RPRESLL--TDAFLFARCLTELDLSDSFLSDDLLCLIASAK---LPLKKLLLSDCHGFTF 282
Query: 301 EGINCLLSKCQSVQYLDLSKADFLTDQCISKLSVFLHSLTSINLSGCCQLTNSTFFTLTR 360
+GI LL K QS+ +L+L A+FL+D+ + KL +F LT +NLS C +LT FF++
Sbjct: 283 DGILYLLDKYQSLVHLNLKGANFLSDEMVMKLGMFFRRLTFLNLSFCSKLTGLAFFSIIE 342
Query: 361 NCPLISEINMERTYLGVEGEEDSHSMLDFVVNVQVRKVYLGDNVLLRDASLIKFASICPN 420
C + + M T GV EE + DF V+ +YL N L D L K + CP
Sbjct: 343 RCVSLRCMIMVGTNFGV--EEYTKDTKDFKSGVKF--LYLSRNHNLLDECLEKISRHCPF 398
Query: 421 LQLLDLNACEGVSGGCIVEVLKKCCDMRHLNLAY-TGIKELE-IDFVVSQLEILNLSGSS 478
++ LD+ C G++ I+EV + C +R L+++ TGIK L +DF + +LE L G+
Sbjct: 399 IESLDVAQCPGITRDGILEVWRNCGKLRSLDISRCTGIKSLGVVDFELPKLESLRACGTW 458
Query: 479 IEDEALSMISRRFPGLLLLDIQNCWCVTAKGVREVVENCRAMKELNLKNCDLVDDDFVVG 538
I+DEAL MIS++ GLL LD+Q C V+++GV+EVV++C ++E+NLK C+ D
Sbjct: 459 IDDEALDMISKKCRGLLHLDLQGCLNVSSRGVKEVVQSCIRLREINLKYCE-ADKKMYTW 517
Query: 539 VKSSSPSLRTIITPSG 554
+ ++PSLR I+ P G
Sbjct: 518 MVFANPSLRKIVPPCG 533
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 123/561 (21%), Positives = 234/561 (41%), Gaps = 60/561 (10%)
Query: 6 FPEECWELVFRFLSHTHDLESLSLVCKQFLSITNHLQSSLKIYDKTILLLPNLFSRFSRL 65
PEE +FR L + ++ SLVCK++LS+ +++L+I P+ F
Sbjct: 11 LPEELILEIFRRLESKPNRDACSLVCKRWLSLERFSRTTLRIGAS---FSPDDFISLLSR 67
Query: 66 KTIDLSNFNGDLKVLLHQIXXXXXXXXXXXXXXXRTIPIDGLRELGSKMKNFKVLTCSNI 125
+ + +++ + D ++ + R D SK K T S
Sbjct: 68 RFLYITSIHVDERISV--------SLPSLSPSPKRKRGRDSSSPSSSKRKKLTDKTHSGA 119
Query: 126 -----GSLQDGHLVVIAYCFPFLEELDISFPLDSQASDFGILRLASLLENLRKINLSGNH 180
SL D L +A FP +E L + + S G+ LA +L+ ++L G +
Sbjct: 120 ENVESSSLTDTGLTALANGFPRIENLSLIWC--PNVSSVGLCSLAQKCTSLKSLDLQGCY 177
Query: 181 LITDKSLFSLCQNYTSMEQISFVTCFKITQVGNAS-AIRLRPSLSSISFNIEKKRIHGPG 239
+ D+ L ++ + +E+++ C +T VG + SL SI K
Sbjct: 178 -VGDQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAK------ 230
Query: 240 LTPLPINLDLIDSFKSLKRLTAVDLSNSFISDEFLVSIAEG------------------- 280
+T L +L+ + S K L + L + +I D+ L+++A+G
Sbjct: 231 ITDL--SLEAVGSH--CKLLEVLYLDSEYIHDKGLIAVAQGCHRLKNLKLQCVSVTDVAF 286
Query: 281 SGGGNL---LNKLILQDCCNCTFEGINCLLSKCQSVQYLDLSKADFLTDQCISKLSVFLH 337
+ G L L +L L + T +G+ + + ++ L LS F++ + + ++
Sbjct: 287 AAVGELCTSLERLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCK 346
Query: 338 SLTSINLSGCCQLTNSTFFTLTRNCPLISEINMERTYLGVEGEEDSHSMLDFVVNVQVRK 397
L + ++GC + + ++CP + E+ + Y G + ++++
Sbjct: 347 ELERVEINGCHNIGTRGIEAIGKSCPRLKELAL--LYCQRIGNSALQEIGKGCKSLEI-- 402
Query: 398 VYLGDNVLLRDASLIKFASICPNLQLLDLNACEGVSGGCIVEVLKKCCDMRHLNLAY--- 454
++L D + D ++ A C NL+ L + C + I+ + K C + L+L +
Sbjct: 403 LHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDK 462
Query: 455 TGIKELEIDFVVSQLEILNLSG-SSIEDEALSMISRRFPGLLLLDIQNCWCVTAKGVREV 513
G K L L+ LN+SG + I D ++ I+R P L LDI + + E+
Sbjct: 463 VGNKALIAIGKGCSLQQLNVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDMPLAEL 522
Query: 514 VENCRAMKELNLKNCDLVDDD 534
E C +K+L L +C + D+
Sbjct: 523 GEGCPMLKDLVLSHCHHITDN 543
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 153/380 (40%), Gaps = 50/380 (13%)
Query: 14 VFRFLSHTHDLESLSLVCKQFLSITNHLQSSLKIYDKTILLLPNLFSRFSRLKTIDLSNF 73
V L D E LVCK++L++ + + L +L L SRF+++ +DLS
Sbjct: 18 VLSRLDSDKDKEVFGLVCKRWLNLQSTDRKKLAAR-AGPHMLRRLASRFTQIVELDLSQ- 75
Query: 74 NGDLKVLLHQIXXXXXXXXXXXXXXXRTIPIDGLRELGSKMKNFKVLTCSNIGSLQDGHL 133
+ L + K +VL N + D L
Sbjct: 76 -------------------SISRSFYPGVTDSDLAVISEGFKFLRVLNLHNCKGITDTGL 116
Query: 134 VVIAYCFPFLEELDISFPLDSQASDFGILRLASLLENLRKINLSGNHLITDKSLFSLCQN 193
I C L+ LD+S+ + SD G+ +A +LR ++L+G ITD+SL SL +
Sbjct: 117 ASIGRCLSLLQFLDVSYC--RKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSER 174
Query: 194 YTSMEQISFVTCFKITQVGNASAIRLRPSLSSISFNIEKKRIHGPGLTPLPINLDLIDSF 253
+E + C IT G A ++ + S+ N + + G++ + S
Sbjct: 175 CRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDIN-KCSNVGDAGVSSVAKA--CASSL 231
Query: 254 KSLKRLTAVDLSNSF---------------------ISDEFLVSIAEGSGGGNLLNKLIL 292
K+LK L + N ISDE ++ +A+ + L L +
Sbjct: 232 KTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDESIMLLADSC--KDSLKNLRM 289
Query: 293 QDCCNCTFEGINCLLSKCQSVQYLDLSKADFLTDQCISKL-SVFLHSLTSINLSGCCQLT 351
C N + ++C+L +C++++ LD+ + +TD L S + L + +S C ++T
Sbjct: 290 DWCLNISDSSLSCILKQCKNLEALDIGCCEEVTDTAFRDLGSDDVLGLKVLKVSNCTKIT 349
Query: 352 NSTFFTLTRNCPLISEINME 371
+ L C + I++
Sbjct: 350 VTGIGKLLDKCSSLEYIDVR 369
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 140/299 (46%), Gaps = 20/299 (6%)
Query: 238 PGLTPLPINLDLIDSFKSLKRLTAVDLSN-SFISDEFLVSIAEGSGGGNLLNKLILQDCC 296
PG+T + DL + K L ++L N I+D L SI +LL L + C
Sbjct: 83 PGVT----DSDLAVISEGFKFLRVLNLHNCKGITDTGLASIGRCL---SLLQFLDVSYCR 135
Query: 297 NCTFEGINCLLSKCQSVQYLDLSKADFLTDQCISKLSVFLHSLTSINLSGCCQLTNSTFF 356
+ +G++ + C ++ L L+ F+TD+ + LS L ++ L GC +T+S
Sbjct: 136 KLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLA 195
Query: 357 TLTRNCPLISEINMER-TYLGVEGEEDSHSMLDFVVNVQVRKVYLGDNVLLRDASLIKFA 415
L + C I +++ + + +G G S + ++ + L D + + S+ A
Sbjct: 196 DLVKGCRKIKSLDINKCSNVGDAG----VSSVAKACASSLKTLKLLDCYKVGNESISSLA 251
Query: 416 SICPNLQLLDLNACEGVSGGCIVEVLKKCCD-MRHLNLAYT-GIKELEIDFVVSQ---LE 470
C NL+ L + C +S I+ + C D +++L + + I + + ++ Q LE
Sbjct: 252 QFCKNLETLIIGGCRDISDESIMLLADSCKDSLKNLRMDWCLNISDSSLSCILKQCKNLE 311
Query: 471 ILNLS-GSSIEDEAL-SMISRRFPGLLLLDIQNCWCVTAKGVREVVENCRAMKELNLKN 527
L++ + D A + S GL +L + NC +T G+ ++++ C +++ +++++
Sbjct: 312 ALDIGCCEEVTDTAFRDLGSDDVLGLKVLKVSNCTKITVTGIGKLLDKCSSLEYIDVRS 370
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 421 LQLLDLNACEGVSGGCIVEVLKKCCDMRHLNLAYTGIKELEIDFVVSQLEILNLSGSSIE 480
LQ LD++ C +S + V + C D+R L+LA I
Sbjct: 126 LQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRF---------------------IT 164
Query: 481 DEALSMISRRFPGLLLLDIQNCWCVTAKGVREVVENCRAMKELNLKNCDLVDDDFVVGV- 539
DE+L +S R L L +Q C +T G+ ++V+ CR +K L++ C V D V V
Sbjct: 165 DESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVA 224
Query: 540 KSSSPSLRTI 549
K+ + SL+T+
Sbjct: 225 KACASSLKTL 234
>AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 |
chr2:10848018-10850275 REVERSE LENGTH=628
Length = 628
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 122/554 (22%), Positives = 213/554 (38%), Gaps = 79/554 (14%)
Query: 1 MSVKDFPEECWELVFRFLSHTHDLESLSLVCKQFLSITNHL-QSSLKIYDKTILLLPNLF 59
+S+ P+EC +FR LS + + + V KQ+L++ + + Q + + K
Sbjct: 62 VSIDVLPDECLFEIFRRLSGPQERSACAFVSKQWLTLVSSIRQKEIDVPSKI-------- 113
Query: 60 SRFSRLKTIDLSNFNGDLKVLLHQIXXXXXXXXXXXXXXXRTIPIDGLRELGSKMKNFKV 119
T D + G L + T GL +L
Sbjct: 114 -------TEDGDDCEG---CLSRSLDGKKATDVRLAAIAVGTAGRGGLGKLS-------- 155
Query: 120 LTCSNIGSLQDGHLVVIAYCFPFLEELDISFPLDSQASDFGILRLASLLENLRKINLSGN 179
+ SN + D L I P L L S S +D G+L +A L K+ L+
Sbjct: 156 IRGSNSAKVSDLGLRSIGRSCPSLGSL--SLWNVSTITDNGLLEIAEGCAQLEKLELNRC 213
Query: 180 HLITDKSLFSLCQNYTSMEQISFVTCFKITQVGNASAIRLRPSLSSISFNIEKKRIHGPG 239
ITDK L ++ ++ ++ +++ C +I G + R L S+S + G
Sbjct: 214 STITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIK-NCPLVRDQG 272
Query: 240 LTPLPINLDLIDSFKSLKRLTAVDLSNSF-------ISDEFLVSIAE---------GSGG 283
+ L N + L+ L D+S + I+D L ++ G+G
Sbjct: 273 IASLLSNTTCSLAKLKLQMLNVTDVSLAVVGHYGLSITDLVLAGLSHVSEKGFWVMGNGV 332
Query: 284 G-NLLNKLILQDCCNCTFEGINCLLSKCQSVQYLDLSKADFLTDQCISKLSVFLHSLTSI 342
G LN L + C T G+ + C +++ +SK+ L+D + + SL S+
Sbjct: 333 GLQKLNSLTITACQGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESL 392
Query: 343 NLSGCCQLTNSTFFTLTRNCPLISEINMERTYLGVEGEEDSHSMLDFVVNVQVRKVYLGD 402
L C ++T FF NC GE+ V + +R + G
Sbjct: 393 QLEECHRVTQFGFFGSLLNC----------------GEK--LKAFSLVNCLSIRDLTTG- 433
Query: 403 NVLLRDASLIKFASICPNLQLLDLNACEGVSGGCIVEVLKKCCDMRHLNL-AYTGIKELE 461
+ +S C L+ L + C G + + K C + ++L GI E
Sbjct: 434 ---------LPASSHCSALRSLSIRNCPGFGDANLAAIGKLCPQLEDIDLCGLKGITESG 484
Query: 462 -IDFVVSQLEILNLSG-SSIEDEALSMISRRFPGLL-LLDIQNCWCVTAKGVREVVENCR 518
+ + S L +N SG S++ D +S I+ R L +L+I C +T + + NC+
Sbjct: 485 FLHLIQSSLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQ 544
Query: 519 AMKELNLKNCDLVD 532
+ +L++ C + D
Sbjct: 545 ILSDLDISKCAISD 558
>AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein |
chr1:7497479-7499386 FORWARD LENGTH=360
Length = 360
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 10/217 (4%)
Query: 302 GINCLLSKCQSVQYLDLSKADFLTDQCISKLSVFLHSLTSINLSGCCQLTNSTFFTLTRN 361
+ + + C +Q LDLSK+ +TD+ + L+ LT +NLSGC +++ LTR
Sbjct: 108 AVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRF 167
Query: 362 CPLISEINMERTYLGVEGEEDSHSMLDFVVN--VQVRKVYLGDNVLLRDASLIKFASICP 419
C + +N+ V + + L+ + N Q++ + LG + D ++ A CP
Sbjct: 168 CRKLKVLNLCGCVKAV-----TDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCP 222
Query: 420 NLQLLDLNACEGVSGGCIVEVLKKCCDMRHLNLAYTGIKELEIDFVVSQLEILNLSGSSI 479
+L+ LDL C ++ +V + C +R L L Y + ++Q + N GS
Sbjct: 223 DLRTLDLCGCVLITDESVVALADWCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGSW- 281
Query: 480 EDEALSMISRRFPGLLLLDIQNCWCVTAKGVREVVEN 516
+++ GL L+I C +T V+ V ++
Sbjct: 282 --KSVKKGKYDEEGLRSLNISQCTALTPSAVQAVCDS 316
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/396 (22%), Positives = 171/396 (43%), Gaps = 30/396 (7%)
Query: 143 LEELDISFPLDSQASDFGILRLASLLENLRKINLSGNHLITDKSLFSLCQNYTSMEQISF 202
L+ LD+S+ + S +R +LL L +++ LI D L L S++++
Sbjct: 200 LKSLDVSYLKITNDS----IRSIALLVKLEVLDMVSCPLIDDGGLQFLENGSPSLQEVDV 255
Query: 203 VTCFKITQVGNASAIRLRPSLSSISFNIEKKRIHGPGLTPLPINLDLIDSFKSLKRLTAV 262
C +++ G S +R P + + + + G + K LK L +
Sbjct: 256 TRCDRVSLSGLISIVRGHPDIQLLKASHCVSEVSGS----------FLKYIKGLKHLKTI 305
Query: 263 DLSNSFISDEFLVSIAEGSGGGNLLNKLILQDCCNCTFEGINCLLSKCQSVQYLDLSKAD 322
+ + +SD LVS++ L ++ L C + T G+ L C +++ L+L+
Sbjct: 306 WIDGAHVSDSSLVSLSSSC---RSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCG 362
Query: 323 FLTDQCISKLSVFLHSLTSINLSGCCQLTNSTFFTLTRNCPLISEINMERTYLGVEGEED 382
F+TD IS ++ +L ++ L C +T +L L+ E+++ Y GV +
Sbjct: 363 FVTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSMLVQELDLTDCY-GVN--DR 419
Query: 383 SHSMLDFVVNVQVRKVYLGDNVLLRDASLIKFASICPNLQLLDLNACEGVSGGCIVEVLK 442
+ N+Q K+ L N+ D + S C L LDL C G + + +
Sbjct: 420 GLEYISKCSNLQRLKLGLCTNI--SDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSR 477
Query: 443 KCCDMRHLNLAY------TGIKELEIDFVVSQLEILNLSGSSIEDEALSMISRRFPGLLL 496
C + L L+Y TG++++ ++S LE+ L +I L+ I+ L
Sbjct: 478 GCKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRGLK--NITGVGLAAIASGCKKLGY 535
Query: 497 LDIQNCWCVTAKGVREVVENCRAMKELNLKNCDLVD 532
LD++ C + G + + ++++NL NC + D
Sbjct: 536 LDVKLCENIDDSGFWALAYFSKNLRQINLCNCSVSD 571
>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 12/217 (5%)
Query: 302 GINCLLSKCQSVQYLDLSKADFLTDQCISKLSVFLHSLTSINLSGCCQLTNSTFFTLTRN 361
+ + + C +Q LDLSK+ +TD + L+ +LT +NLSGC +++ LTR
Sbjct: 108 AVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRF 167
Query: 362 CPLISEINMERTYLGVEGEEDSHSMLDFVVNVQVRKVYLGDNVLLRDASLIKFASICPNL 421
C + +N+ VE D+ Q++ + LG + D ++ A CP+L
Sbjct: 168 CRKLKILNLCGC---VEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDL 224
Query: 422 QLLDLNACEGVSGGCIVEVLKKCCDMRHLNLAYTGIKELEIDFVVSQLEILNLSGSSIED 481
+ LDL +C ++ +V + +C +R L L Y + ++Q SG +
Sbjct: 225 RTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQ------SGVKNKH 278
Query: 482 EALSMISR-RF--PGLLLLDIQNCWCVTAKGVREVVE 515
E + + +F GL L+I C +T V+ V +
Sbjct: 279 EMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCD 315
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 12/217 (5%)
Query: 302 GINCLLSKCQSVQYLDLSKADFLTDQCISKLSVFLHSLTSINLSGCCQLTNSTFFTLTRN 361
+ + + C +Q LDLSK+ +TD + L+ +LT +NLSGC +++ LTR
Sbjct: 108 AVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRF 167
Query: 362 CPLISEINMERTYLGVEGEEDSHSMLDFVVNVQVRKVYLGDNVLLRDASLIKFASICPNL 421
C + +N+ VE D+ Q++ + LG + D ++ A CP+L
Sbjct: 168 CRKLKILNLCGC---VEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDL 224
Query: 422 QLLDLNACEGVSGGCIVEVLKKCCDMRHLNLAYTGIKELEIDFVVSQLEILNLSGSSIED 481
+ LDL +C ++ +V + +C +R L L Y + ++Q SG +
Sbjct: 225 RTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQ------SGVKNKH 278
Query: 482 EALSMISR-RF--PGLLLLDIQNCWCVTAKGVREVVE 515
E + + +F GL L+I C +T V+ V +
Sbjct: 279 EMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCD 315
>AT5G01720.1 | Symbols: | RNI-like superfamily protein |
chr5:267118-270391 REVERSE LENGTH=665
Length = 665
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 136/313 (43%), Gaps = 49/313 (15%)
Query: 259 LTAVDLSN--SFISDEFLVSIAEGSGGGNLLNKLILQDCCNCTFEGINCLLSKCQSVQYL 316
L +DLS+ S IS +F S+ + S L + L D C+ T +G+ + + C S++ +
Sbjct: 280 LQRLDLSHCSSVISLDFASSLKKVSA----LQSIRL-DGCSVTPDGLKAIGTLCNSLKEV 334
Query: 317 DLSKADFLTDQCISKLSVFLHSLTSINLSGCCQLTNSTFFTLTRNCPLISEINMERTYLG 376
LSK +TD+ +S L + L L ++++ C +L+ + + +CPL+ + ME L
Sbjct: 335 SLSKCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSITQIANSCPLLVSLKMESCSLV 394
Query: 377 --------------------VEGEEDSHSMLDFVVNVQVRKVYLGDNVLLRDASLIKFAS 416
+ E D + + + + LG + + D L
Sbjct: 395 SREAFWLIGQKCRLLEELDLTDNEIDDEGLKSISSCLSLSSLKLGICLNITDKGLSYIGM 454
Query: 417 ICPNLQLLDLNACEGVSGGCIVEVLKKCCDMRHLNLAYTGIKELEIDFVVSQLEILNLSG 476
C NL+ LDL G++ I + + C + +N++Y
Sbjct: 455 GCSNLRELDLYRSVGITDVGISTIAQGCIHLETINISYC--------------------- 493
Query: 477 SSIEDEALSMISRRFPGLLLLDIQNCWCVTAKGVREVVENCRAMKELNLKNCDLVDDDFV 536
I D++L +S + L + + C +T++G+ + C+ + +++LK C ++D +
Sbjct: 494 QDITDKSLVSLS-KCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDLKKCPSINDAGL 552
Query: 537 VGVKSSSPSLRTI 549
+ + S +L+ I
Sbjct: 553 LALAHFSQNLKQI 565
>AT3G58530.1 | Symbols: | RNI-like superfamily protein |
chr3:21645759-21648219 FORWARD LENGTH=353
Length = 353
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 19/222 (8%)
Query: 128 LQDGHLVVIAYCFPFLEELDISFPLDSQASDFGILRLASLLENLRKINLSGNHLITDKSL 187
+ D + I P L+ I + + + +D GI L ++ +NLSG +TDKS+
Sbjct: 124 ISDNGIEAITSICPKLKVFSIYW--NVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSM 181
Query: 188 FSLCQNYTSMEQISFVTCFKITQVGNASAIRLRPSLSSISFNIEKKRIHGPGLTPLP-IN 246
+ ++Y +E ++ C KIT G ++ SL +++ G T +
Sbjct: 182 QLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNL------YALSGFTDKAYMK 235
Query: 247 LDLIDSFKSLKRLTAVDLSNSFISDEFLVSIAEGSGGGNLLNKLILQDCCNCTFEGINCL 306
+ L+ + L A + ISDE + IA+ N L L L C T G+N +
Sbjct: 236 ISLLADLRFLDICGAQN-----ISDEGIGHIAK----CNKLESLNLTWCVRITDAGVNTI 286
Query: 307 LSKCQSVQYLDLSKADFLTDQCISKLSVFLH-SLTSINLSGC 347
+ C S+++L L +TD+C+ LS +LT+++++GC
Sbjct: 287 ANSCTSLEFLSLFGIVGVTDRCLETLSQTCSTTLTTLDVNGC 328
>AT3G07550.2 | Symbols: | RNI-like superfamily protein |
chr3:2409946-2411133 FORWARD LENGTH=395
Length = 395
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/391 (22%), Positives = 152/391 (38%), Gaps = 64/391 (16%)
Query: 2 SVKDFPEECWELVFRFLSHTHDLESLSLVCKQFLSITNHLQSSLKIYDKTILLLPNLFSR 61
S+ P++C +F+ L D +S L C ++L+I N + SL+
Sbjct: 14 SIIHLPDDCLSFIFQRLDSVADHDSFGLTCHRWLNIQNISRRSLQFQ-----------CS 62
Query: 62 FSRLKTIDLSNFNGDLKVL-LHQIXXXXXXXXXXXXXXXRTI---PIDGLRELGSKMKNF 117
FS L LS N D+ LH++ + +D LR G+++
Sbjct: 63 FSVLNPSSLSQTNPDVSSHHLHRLLTRFQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTL 122
Query: 118 KVLTCSNIGSLQDGHLVVIAYCFPFLEELDISFPLDSQASDFGILRLASLLENLRKINLS 177
+ C I DG + ++C L + SD G+ LA +L+ +NLS
Sbjct: 123 YLDCCFGIS--DDGISTIASFC----PNLSVVSLYRCNISDIGLETLARASLSLKCVNLS 176
Query: 178 GNHLITDKSLFSLCQNYTSMEQISFVTCFKITQVG-----------NASAIRLRP----- 221
L++D + +L Q +E + C IT VG +A + +L P
Sbjct: 177 YCPLVSDFGIKALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITG 236
Query: 222 ----------SLSSISFNIEKKRIHGPGLTPLPINLDLIDSFKSLKRLTAVDLSNSFISD 271
++S +S I K GL P+ S R+ + + + + D
Sbjct: 237 IISGGGIEFLNISGVSCYIRKD-----GLVPIG------SGIASKLRILNLRMCRT-VGD 284
Query: 272 EFLVSIAEGSGGGNLLNKLILQDCCNCTFEGINCLLSKCQSVQYLDLSKADFLTDQCISK 331
E + +IA+G LL + L C G + C++++ L +++ L DQ +
Sbjct: 285 ESIEAIAKGCP---LLQEWNLALCHEVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLA 341
Query: 332 LSVFLHSLTSINLSGCCQLTNST--FFTLTR 360
L +L + ++G +LT + F L R
Sbjct: 342 LRCGCMNLQILYMNGNARLTPTAIEMFRLHR 372
>AT3G07550.1 | Symbols: | RNI-like superfamily protein |
chr3:2409946-2411133 FORWARD LENGTH=395
Length = 395
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/391 (22%), Positives = 152/391 (38%), Gaps = 64/391 (16%)
Query: 2 SVKDFPEECWELVFRFLSHTHDLESLSLVCKQFLSITNHLQSSLKIYDKTILLLPNLFSR 61
S+ P++C +F+ L D +S L C ++L+I N + SL+
Sbjct: 14 SIIHLPDDCLSFIFQRLDSVADHDSFGLTCHRWLNIQNISRRSLQFQ-----------CS 62
Query: 62 FSRLKTIDLSNFNGDLKVL-LHQIXXXXXXXXXXXXXXXRTI---PIDGLRELGSKMKNF 117
FS L LS N D+ LH++ + +D LR G+++
Sbjct: 63 FSVLNPSSLSQTNPDVSSHHLHRLLTRFQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTL 122
Query: 118 KVLTCSNIGSLQDGHLVVIAYCFPFLEELDISFPLDSQASDFGILRLASLLENLRKINLS 177
+ C I DG + ++C L + SD G+ LA +L+ +NLS
Sbjct: 123 YLDCCFGIS--DDGISTIASFC----PNLSVVSLYRCNISDIGLETLARASLSLKCVNLS 176
Query: 178 GNHLITDKSLFSLCQNYTSMEQISFVTCFKITQVG-----------NASAIRLRP----- 221
L++D + +L Q +E + C IT VG +A + +L P
Sbjct: 177 YCPLVSDFGIKALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITG 236
Query: 222 ----------SLSSISFNIEKKRIHGPGLTPLPINLDLIDSFKSLKRLTAVDLSNSFISD 271
++S +S I K GL P+ S R+ + + + + D
Sbjct: 237 IISGGGIEFLNISGVSCYIRKD-----GLVPIG------SGIASKLRILNLRMCRT-VGD 284
Query: 272 EFLVSIAEGSGGGNLLNKLILQDCCNCTFEGINCLLSKCQSVQYLDLSKADFLTDQCISK 331
E + +IA+G LL + L C G + C++++ L +++ L DQ +
Sbjct: 285 ESIEAIAKGCP---LLQEWNLALCHEVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLA 341
Query: 332 LSVFLHSLTSINLSGCCQLTNST--FFTLTR 360
L +L + ++G +LT + F L R
Sbjct: 342 LRCGCMNLQILYMNGNARLTPTAIEMFRLHR 372