Miyakogusa Predicted Gene

Lj0g3v0199939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199939.1 Non Chatacterized Hit- tr|I1KAP0|I1KAP0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,29.45,0.0000002,SUBFAMILY NOT NAMED,NULL; TOPOISOMERASE-RELATED
PROTEIN,NULL; seg,NULL,CUFF.12694.1
         (161 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61690.1 | Symbols:  | nucleotidyltransferases | chr3:2282834...   165   1e-41

>AT3G61690.1 | Symbols:  | nucleotidyltransferases |
            chr3:22828349-22833477 FORWARD LENGTH=1303
          Length = 1303

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 102/161 (63%), Gaps = 4/161 (2%)

Query: 4    AAIESSEHKADILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXXXXXXAYLQGRYPLDG 63
            ++ E  E K DILN DF+SHWQNLQ+GR CQ S+H              AYLQGR P DG
Sbjct: 994  SSAEQVERKNDILNGDFISHWQNLQYGRSCQNSQHPPVLYPAPVVVPP-AYLQGRLPWDG 1052

Query: 64   PGRPD--MNLFAQLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDMPRYRSGTGTYLPNPK 121
            PGRP    N   QLM+YGPR+VP AP+Q VSTRP N+Y R+A++ PRYRSGTGTY PNPK
Sbjct: 1053 PGRPLAYTNAVNQLMTYGPRLVPVAPVQPVSTRPPNIYPRYANETPRYRSGTGTYFPNPK 1112

Query: 122  ASARDRHPTXXXXXXX-XXXXXXHHSDREGNWNMNPKLRAT 161
             S R++ PT              HHSDREGNWN   K R +
Sbjct: 1113 ISPREQRPTSGMRRGNYGHDRTDHHSDREGNWNAGSKTRGS 1153