Miyakogusa Predicted Gene

Lj0g3v0199689.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199689.1 Non Chatacterized Hit- tr|B4FQZ1|B4FQZ1_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,26.84,0.00000000003,zf-met,NULL; U1-like zinc finger,Zinc finger,
U1-type; zinc finger,Zinc finger, C2H2-like; seg,NULL;,CUFF.12654.1
         (517 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61190.1 | Symbols:  | putative endonuclease or glycosyl hydr...    52   7e-07

>AT5G61190.1 | Symbols:  | putative endonuclease or glycosyl
           hydrolase with C2H2-type zinc finger domain |
           chr5:24615480-24619886 FORWARD LENGTH=995
          Length = 995

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 34/220 (15%)

Query: 192 MYCEVCKAECNSPEIMEQHKNGKRHKKNMKIH---------------EELQRRNNLN--- 233
           + C+VC+    + +  + H  GK+H+ N+++                +E+  ++N+N   
Sbjct: 297 LLCKVCQISFTNNDTYKNHTYGKKHRNNLELQSGKSKNILVGPAEPSKEVLEKHNMNKKV 356

Query: 234 -----GQQSGQIPTSQVNLADHPQKVQNSEKKECPTENMGSEITADYDKNEIKLQNNVGE 288
                 Q + +      N+    Q V NS  +     NM S+  A     +++ +  VGE
Sbjct: 357 MIESRAQANAEFVCLMCNVVCQSQIVFNSHLRGKKHANMLSQSEALIVSTKLQ-EKGVGE 415

Query: 289 T---SEVPAEGP--EGNTTDNSALGDRGLKRKMRGGKVRRNAKKTTAQLSEAEQPTTFIC 343
               SE  AE         +   L D   K   +G +V+   K+ TA L  A     +IC
Sbjct: 416 KEQPSETVAELQLQSQKAQEKQVLVDSK-KLPEKGDEVKGQPKEMTA-LRNA--SAKYIC 471

Query: 344 ELCNAKCESPAVYNSHMAGKKHLANLKRANGSQALPGAGK 383
            +CN  C SP V+ +H+ G+KH ANL ++   QAL  + K
Sbjct: 472 RMCNVGCHSPIVFETHLRGQKHAANLNQSK-DQALIDSKK 510