Miyakogusa Predicted Gene

Lj0g3v0199409.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199409.1 Non Chatacterized Hit- tr|I1KIC6|I1KIC6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,27.82,0.0000000000002,no description,NULL;
RNI-like,NULL,CUFF.12636.1
         (383 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10410.1 | Symbols:  | Leucine-rich repeat (LRR) family prote...    50   2e-06
AT3G52680.2 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    50   3e-06
AT3G52680.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    50   3e-06

>AT4G10410.1 | Symbols:  | Leucine-rich repeat (LRR) family protein
           | chr4:6448983-6449998 REVERSE LENGTH=263
          Length = 263

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 100 VPANLFNCATIVTLKLEGPFILHVPSRIQLSSLKSLHLNVRKCEPSCKKFLSGSPALQFF 159
           +P++L+ C ++V LKL+G  IL VP  + L SL++L L    C+    +F+  +P+L++F
Sbjct: 103 LPSSLYTCKSLVILKLDGGIILDVPPMVCLPSLRTLELKGYTCD--VDEFVIDTPSLEYF 160

Query: 160 YLNEIN 165
            L + N
Sbjct: 161 KLEDRN 166


>AT3G52680.2 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr3:19527075-19528838
           FORWARD LENGTH=456
          Length = 456

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 87  FMSQHRNHGPVFFVPANLFNCATIVTLKLEGPFILHVPSRIQLSSLKSLHLN-VR-KCEP 144
           F       G  F  P++L  C T+ TLKL    ++ +PS + + SL++LHL  VR K E 
Sbjct: 127 FYPAELGKGVTFTFPSSLCTCNTLETLKLVLCILVDIPSPVLMKSLRTLHLEFVRYKDES 186

Query: 145 SCKKFLSGSPALQFFYLNEINNLRLKEFRAERNSQGNLIVSNNLRNLHEYDYV 197
           S +  LSG P L+   L   ++  +K F  E  S   L + +N      + YV
Sbjct: 187 SVRNLLSGCPGLEELRLYRGDDSDIKVFTIEVPSLQRLTIHDNNDGPEFWGYV 239


>AT3G52680.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr3:19527075-19528838
           FORWARD LENGTH=456
          Length = 456

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 87  FMSQHRNHGPVFFVPANLFNCATIVTLKLEGPFILHVPSRIQLSSLKSLHLN-VR-KCEP 144
           F       G  F  P++L  C T+ TLKL    ++ +PS + + SL++LHL  VR K E 
Sbjct: 127 FYPAELGKGVTFTFPSSLCTCNTLETLKLVLCILVDIPSPVLMKSLRTLHLEFVRYKDES 186

Query: 145 SCKKFLSGSPALQFFYLNEINNLRLKEFRAERNSQGNLIVSNNLRNLHEYDYV 197
           S +  LSG P L+   L   ++  +K F  E  S   L + +N      + YV
Sbjct: 187 SVRNLLSGCPGLEELRLYRGDDSDIKVFTIEVPSLQRLTIHDNNDGPEFWGYV 239