Miyakogusa Predicted Gene

Lj0g3v0199269.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199269.1 Non Chatacterized Hit- tr|C6T2R6|C6T2R6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.31767
PE,86.49,0,seg,NULL; SAP18,Sin3 associated polypeptide
p18,CUFF.12625.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45640.1 | Symbols: SAP18, ATSAP18 | SIN3 associated polypept...   185   1e-47
AT2G45640.2 | Symbols: SAP18 | SIN3 associated polypeptide P18 |...   175   9e-45

>AT2G45640.1 | Symbols: SAP18, ATSAP18 | SIN3 associated polypeptide
           P18 | chr2:18799881-18801323 REVERSE LENGTH=152
          Length = 152

 Score =  185 bits (469), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 103/119 (86%), Gaps = 1/119 (0%)

Query: 33  VDREKTCPLLLRVFTKIGGHHTMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPA 92
           VDREKTCPLLLRVFTK GGHHT ED+AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ A
Sbjct: 33  VDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVA 92

Query: 93  ARRRKAKLSFAFVFPDKNGRFKVQEVGKTLSFGTGRL-DDGKALADLGFEIGDYLDVSI 150
           ARRR A+LSFAFV+P+  G + V+EVG+T+++   +  DD K L++L FEIGDYLDV+I
Sbjct: 93  ARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151


>AT2G45640.2 | Symbols: SAP18 | SIN3 associated polypeptide P18 |
           chr2:18799881-18801323 REVERSE LENGTH=149
          Length = 149

 Score =  175 bits (444), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 100/119 (84%), Gaps = 4/119 (3%)

Query: 33  VDREKTCPLLLRVFTKIGGHHTMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPA 92
           VDREKTCPLLLRVFTK GGHHT ED+AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ A
Sbjct: 33  VDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVA 92

Query: 93  ARRRKAKLSFAFVFPDKNGRFKVQEVGKTLSFGTGRL-DDGKALADLGFEIGDYLDVSI 150
           ARRR A+LSFAFV+P+  G +    VG+T+++   +  DD K L++L FEIGDYLDV+I
Sbjct: 93  ARRRNARLSFAFVYPNNKGGYN---VGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 148