Miyakogusa Predicted Gene

Lj0g3v0199169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199169.1 Non Chatacterized Hit- tr|I1N6H4|I1N6H4_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,77.78,3e-17,seg,NULL,TC74084.path1.1
         (61 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15680.1 | Symbols:  | ARM repeat superfamily protein | chr5:...    59   7e-10

>AT5G15680.1 | Symbols:  | ARM repeat superfamily protein |
            chr5:5101188-5110793 REVERSE LENGTH=2153
          Length = 2153

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 16   EPGMSQREVTLQNTRLILGRVLDRSALGKRKDHKKLVPFVVNIGN 60
            E G+  R+V LQNTRL+LGRVLD  ALG R+D+++LVPFV  I N
Sbjct: 2109 ESGIPPRDVALQNTRLMLGRVLDNCALG-RRDYRRLVPFVTTIAN 2152