Miyakogusa Predicted Gene

Lj0g3v0199009.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199009.1 Non Chatacterized Hit- tr|I3SG74|I3SG74_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,94.47,0,RIBOSOMAL_S7,Ribosomal protein S7, conserved site;
Ribosomal_S7,Ribosomal protein S7 domain; Ribosom,CUFF.12609.1
         (207 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37270.2 | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B | c...   368   e-102
AT2G37270.1 | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B | c...   368   e-102
AT3G11940.2 | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein ...   368   e-102
AT3G11940.1 | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein ...   368   e-102
ATCG00900.1 | Symbols: RPS7.1, RPS7 | Ribosomal protein S7p/S5e ...    60   1e-09
ATCG01240.1 | Symbols: RPS7.2 | ribosomal protein S7 | chrC:1407...    60   1e-09

>AT2G37270.2 | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B |
           chr2:15647883-15649042 REVERSE LENGTH=207
          Length = 207

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/190 (91%), Positives = 184/190 (96%)

Query: 18  DVKLFNRWSYDDVQVNDISLADYIGVVASKHATYVPHTAGSYSVKRFRKAQCPLIERLTN 77
           +VKLFNRWS+DDV V DISL DYIGV  SKHAT+VPHTAG YSVKRFRKAQCP++ERLTN
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVV 137
           SLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA++NSGPREDATRIGSAGVV
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197

Query: 198 EIERVAKANR 207
           EIERVAKANR
Sbjct: 198 EIERVAKANR 207


>AT2G37270.1 | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B |
           chr2:15647883-15649042 REVERSE LENGTH=207
          Length = 207

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/190 (91%), Positives = 184/190 (96%)

Query: 18  DVKLFNRWSYDDVQVNDISLADYIGVVASKHATYVPHTAGSYSVKRFRKAQCPLIERLTN 77
           +VKLFNRWS+DDV V DISL DYIGV  SKHAT+VPHTAG YSVKRFRKAQCP++ERLTN
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVV 137
           SLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA++NSGPREDATRIGSAGVV
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197

Query: 198 EIERVAKANR 207
           EIERVAKANR
Sbjct: 198 EIERVAKANR 207


>AT3G11940.2 | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein 5A
           | chr3:3778175-3779354 REVERSE LENGTH=207
          Length = 207

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/190 (90%), Positives = 185/190 (97%)

Query: 18  DVKLFNRWSYDDVQVNDISLADYIGVVASKHATYVPHTAGSYSVKRFRKAQCPLIERLTN 77
           +VKLFNRW+YDDV V DISL DYIGV A+KHAT+VPHTAG YSVKRFRKAQCP++ERLTN
Sbjct: 18  EVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVV 137
           SLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA++NSGPREDATRIGSAGVV
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197

Query: 198 EIERVAKANR 207
           EIERVAKANR
Sbjct: 198 EIERVAKANR 207


>AT3G11940.1 | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein 5A
           | chr3:3778175-3779354 REVERSE LENGTH=207
          Length = 207

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/190 (90%), Positives = 185/190 (97%)

Query: 18  DVKLFNRWSYDDVQVNDISLADYIGVVASKHATYVPHTAGSYSVKRFRKAQCPLIERLTN 77
           +VKLFNRW+YDDV V DISL DYIGV A+KHAT+VPHTAG YSVKRFRKAQCP++ERLTN
Sbjct: 18  EVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVV 137
           SLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA++NSGPREDATRIGSAGVV
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197

Query: 198 EIERVAKANR 207
           EIERVAKANR
Sbjct: 198 EIERVAKANR 207


>ATCG00900.1 | Symbols: RPS7.1, RPS7 | Ribosomal protein S7p/S5e
           family protein | chrC:97478-97945 REVERSE LENGTH=155
          Length = 155

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 18/164 (10%)

Query: 46  SKHATYVPHTAGSYSVKRFRKAQCPLIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHL 105
           S+  T    TA S  + R R     L+  L N ++ HG    KK +A +II  A++ I  
Sbjct: 2   SRRGTAEEKTAKSDPIYRNR-----LVNMLVNRILKHG----KKSLAYQIIYRALKKIQQ 52

Query: 106 LTDLNPIQVIVDAVINSGP--REDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE 163
            T+ NP+ V+  A+    P     A R+G  G   +  ++I   +    AI  L   +R+
Sbjct: 53  KTETNPLSVLRQAIRGVTPDIAVKARRVG--GSTHQVPIEIGSTQGKALAIRWLLGASRK 110

Query: 164 AAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
              RN   +A  L+ EL++AAKGS +  AI+KK+E  R+A+ANR
Sbjct: 111 RPGRN---MAFKLSSELVDAAKGSGD--AIRKKEETHRMAEANR 149


>ATCG01240.1 | Symbols: RPS7.2 | ribosomal protein S7 |
           chrC:140704-141171 FORWARD LENGTH=155
          Length = 155

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 18/164 (10%)

Query: 46  SKHATYVPHTAGSYSVKRFRKAQCPLIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHL 105
           S+  T    TA S  + R R     L+  L N ++ HG    KK +A +II  A++ I  
Sbjct: 2   SRRGTAEEKTAKSDPIYRNR-----LVNMLVNRILKHG----KKSLAYQIIYRALKKIQQ 52

Query: 106 LTDLNPIQVIVDAVINSGP--REDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE 163
            T+ NP+ V+  A+    P     A R+G  G   +  ++I   +    AI  L   +R+
Sbjct: 53  KTETNPLSVLRQAIRGVTPDIAVKARRVG--GSTHQVPIEIGSTQGKALAIRWLLGASRK 110

Query: 164 AAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
              RN   +A  L+ EL++AAKGS +  AI+KK+E  R+A+ANR
Sbjct: 111 RPGRN---MAFKLSSELVDAAKGSGD--AIRKKEETHRMAEANR 149