Miyakogusa Predicted Gene

Lj0g3v0198799.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0198799.1 tr|Q8H6U4|Q8H6U4_PRUDU Heat shock protein 60
(Fragment) OS=Prunus dulcis GN=HSP60 PE=2 SV=1,75,0.00002,
,CUFF.12598.1
         (85 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23990.1 | Symbols: HSP60, HSP60-3B | heat shock protein 60 |...    50   2e-07
AT2G33210.2 | Symbols: HSP60-2 | heat shock protein 60-2 | chr2:...    47   2e-06
AT2G33210.1 | Symbols: HSP60-2 | heat shock protein 60-2 | chr2:...    47   2e-06

>AT3G23990.1 | Symbols: HSP60, HSP60-3B | heat shock protein 60 |
           chr3:8669013-8672278 FORWARD LENGTH=577
          Length = 577

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/29 (72%), Positives = 27/29 (93%)

Query: 50  QRVTISKDDTLILDGADDKKVIEERCKQV 78
           ++VT+SKDDT+ILDGA DKK IEERC+Q+
Sbjct: 351 KKVTVSKDDTVILDGAGDKKGIEERCEQI 379


>AT2G33210.2 | Symbols: HSP60-2 | heat shock protein 60-2 |
           chr2:14075093-14078568 REVERSE LENGTH=580
          Length = 580

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 12/82 (14%)

Query: 1   MKGPG---NKTVTVNEVEALFGLFLTLCKVSTALVTHTPLYFKFIRLFLFFH-QRVTISK 56
           +K PG   N+   ++++ AL G        +  +     +    I L +F + ++VT+SK
Sbjct: 302 IKAPGFGENRKANLHDLAALTG--------AQVITEELGMNLDNIDLSMFGNCKKVTVSK 353

Query: 57  DDTLILDGADDKKVIEERCKQV 78
           DDT++LDGA DK+ I ERC+Q+
Sbjct: 354 DDTVVLDGAGDKQAIGERCEQI 375


>AT2G33210.1 | Symbols: HSP60-2 | heat shock protein 60-2 |
           chr2:14075093-14078568 REVERSE LENGTH=585
          Length = 585

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 12/82 (14%)

Query: 1   MKGPG---NKTVTVNEVEALFGLFLTLCKVSTALVTHTPLYFKFIRLFLFFH-QRVTISK 56
           +K PG   N+   ++++ AL G        +  +     +    I L +F + ++VT+SK
Sbjct: 307 VKAPGFGENRKANLHDLAALTG--------AQVITEELGMNLDNIDLSMFGNCKKVTVSK 358

Query: 57  DDTLILDGADDKKVIEERCKQV 78
           DDT++LDGA DK+ I ERC+Q+
Sbjct: 359 DDTVVLDGAGDKQAIGERCEQI 380