Miyakogusa Predicted Gene

Lj0g3v0198779.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0198779.1 Non Chatacterized Hit- tr|K3YXX5|K3YXX5_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si019124,26.75,0.000000000002,seg,NULL,CUFF.12594.1
         (428 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52290.1 | Symbols: SHOC1 | shortage in chiasmata 1 | chr5:21...   154   1e-37

>AT5G52290.1 | Symbols: SHOC1 | shortage in chiasmata 1 |
           chr5:21230353-21236554 REVERSE LENGTH=1594
          Length = 1594

 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 140/438 (31%), Positives = 215/438 (49%), Gaps = 42/438 (9%)

Query: 1   MRTRFLNNDYFTLPPPSHRHHETLPFLHLPVPRLSTPPP---SSVHNHLRFHPPLRLSLL 57
           MRTRFLN DYF+ PP SH   ETL FL+LP P  + P P   +   + LRF     +S+ 
Sbjct: 1   MRTRFLNIDYFSTPP-SHVF-ETLGFLNLPAPD-NFPAPIVYNGEEDRLRFGSIENVSIP 57

Query: 58  TDPLPIDAALSTFLSDVLPHRIHLESYNLSVPDLDTNREHQAEVIFEDHLPEADIEFLKE 117
              LPI+AALS FLSDV+P R+ ++     + D          V + D   + D      
Sbjct: 58  IGNLPIEAALSKFLSDVVPDRVSVDYRVFEIDD------SSLGVYYSDEKDDGD------ 105

Query: 118 SATIARSDKSDTVREPIQFETPELDTLLENECF-TENERMQMLSQTPDVENS-LEMVKPE 175
               A +DK+    + I+ ETPELD  +EN+   T  + +Q  S+  +++N  ++    +
Sbjct: 106 ----AIADKA--TPKIIELETPELDFEMENKLLCTSEDHLQCFSEVLEIKNDPVKYEGSD 159

Query: 176 VLWQYPYEALXXXXXXXXXXXXYLKGEKEYSLEDNISMQHL-PHIEQNIFLVLEVDEESL 234
           ++ Q   +              Y   E   S+ +N   + + P  +   F +LEVDE +L
Sbjct: 160 IILQNSKDIQEQIYSVDYIPSDYFT-ENNTSVAENECFRKIQPWFKDARFPLLEVDEVNL 218

Query: 235 GIPSCLSMVEIVDSYFENIRPQNFDERYQSVTEGKELLGSEEQNMMKFFSDDCXXXXXXX 294
              S LS+++ V +  E I PQ+ +     +   KEL+GS++ +++   S DC       
Sbjct: 219 SELSSLSVLDKVFTVLETIEPQDTNAGSSLIINSKELIGSKDYDLLDVLSTDCYLNKSGQ 278

Query: 295 XXXXXPDN----DFINMLETEHVDWNIALQGKGQVDSALLANLVTFQEYIFLDEDLIQTL 350
                 D     D + +LE  + +     QGK       +A  VT++E+  LD D+    
Sbjct: 279 SDVVPEDEFSEMDIVTILEISNAE---EFQGK-------VAVPVTYEEFQILDVDISDVF 328

Query: 351 DAFYDTKASVDQERSDQMFMKEFNFKSFDELVVSNEMALIDDRFKSLPVPVISDYEKLIT 410
           D F   + +++ E    MF KE NFK FDELVVS+E+A  DD FKSLP P++ DYE   +
Sbjct: 329 DIFLCLQKAIEPEICYGMFSKEMNFKDFDELVVSSELAFTDDAFKSLPTPILHDYEMTRS 388

Query: 411 PHDIIGELFSNMKTRPLS 428
              I  ++ S +K + LS
Sbjct: 389 LELIYEDVLSKIKPQSLS 406