Miyakogusa Predicted Gene

Lj0g3v0198759.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0198759.3 Non Chatacterized Hit- tr|Q2RAU3|Q2RAU3_ORYSJ
Transcription initiation factor IIE, putative
OS=Oryza,56.76,6e-19,HTH_TFE_IIE,Transcription factor TFE/TFIIEalpha
HTH domain; coiled-coil,NULL; no description,Winged ,CUFF.12595.3
         (207 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03280.1 | Symbols:  | Transcription factor TFIIE, alpha subu...   313   6e-86
AT4G20340.1 | Symbols:  | Transcription factor TFIIE, alpha subu...   266   5e-72
AT4G20810.1 | Symbols:  | transcription initiation factor IIE (T...   209   2e-54

>AT1G03280.1 | Symbols:  | Transcription factor TFIIE, alpha subunit
           | chr1:803635-806758 FORWARD LENGTH=479
          Length = 479

 Score =  313 bits (802), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 173/205 (84%), Gaps = 5/205 (2%)

Query: 1   MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKD 60
           +++P+ KLV+L ARAFYDD T+K DNQ KS RSDNRGIA VVLDAL RRQWVREEDLAKD
Sbjct: 12  VLQPFVKLVRLVARAFYDDYTTKSDNQQKSARSDNRGIAAVVLDALARRQWVREEDLAKD 71

Query: 61  LKLHTKQLRRTLRFFEEEKFITRDHRRETAKGAKIYSAAVAANADGQHTGKEGEEKVKLH 120
           L+LH KQLR+ +R FEEEK I RDHR+ETAKGAK+YSAAVAA  DG+      E+KVKLH
Sbjct: 72  LQLHAKQLRKIIRLFEEEKLIMRDHRKETAKGAKMYSAAVAATTDGR-----AEDKVKLH 126

Query: 121 THSYCCLDYAQIYDVTRYRLHRMKHKLKDELENKNTLQEYICPNCGKRYNALDALRLISF 180
           THSYCCLDYAQI DV R+RLHRMK +LKDELE+KNT+QEY CPNC ++YNALDALRLIS 
Sbjct: 127 THSYCCLDYAQICDVVRFRLHRMKKRLKDELEDKNTVQEYGCPNCQRKYNALDALRLISM 186

Query: 181 EDEDFHCESCNGKLEVESDKIAAQE 205
            D+ FHCE+CNG+L VE +K+ ++E
Sbjct: 187 VDDSFHCENCNGELVVECNKLTSEE 211


>AT4G20340.1 | Symbols:  | Transcription factor TFIIE, alpha subunit
           | chr4:10985011-10987748 FORWARD LENGTH=475
          Length = 475

 Score =  266 bits (681), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 125/205 (60%), Positives = 163/205 (79%), Gaps = 6/205 (2%)

Query: 1   MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKD 60
           ++EP+ KLV+L  R FYD+ T + DNQ KS + + +G AV+VLDALTRRQWVREEDLAK+
Sbjct: 13  VLEPFVKLVRLLVRIFYDNYTPESDNQQKSVK-NVKGSAVIVLDALTRRQWVREEDLAKE 71

Query: 61  LKLHTKQLRRTLRFFEEEKFITRDHRRETAKGAKIYSAAVAANADGQHTGKEGEEKVKLH 120
           +K + K+LR+ +R FEE+KF+ R HR+ETAK AK+YS AV    DG+      E+ VK H
Sbjct: 72  VKRNAKELRKLIRHFEEQKFVMRYHRKETAKRAKMYSYAVGGTTDGR-----AEDNVKFH 126

Query: 121 THSYCCLDYAQIYDVTRYRLHRMKHKLKDELENKNTLQEYICPNCGKRYNALDALRLISF 180
           THSYCCLDYAQIYD+ RY+LHR+K K KDELE++NT+QEY CPNC ++YNALDALRLIS 
Sbjct: 127 THSYCCLDYAQIYDIVRYKLHRLKKKFKDELEDRNTVQEYGCPNCKRKYNALDALRLISM 186

Query: 181 EDEDFHCESCNGKLEVESDKIAAQE 205
           ED+ FHCE+CNG+L +E +K+ ++E
Sbjct: 187 EDDSFHCENCNGELVMECNKLISEE 211


>AT4G20810.1 | Symbols:  | transcription initiation factor IIE
           (TFIIE) alpha subunit family protein / general
           transcription factor TFIIE family protein |
           chr4:11141427-11143597 REVERSE LENGTH=416
          Length = 416

 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/198 (53%), Positives = 141/198 (71%), Gaps = 29/198 (14%)

Query: 8   LVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKDLKLHTKQ 67
           +VKL A+ FYD+ T K +NQ KS ++ + GIAV+VLDALTRRQWVREEDLAK+LKL+TKQ
Sbjct: 1   MVKLVAKTFYDNYTPKNNNQKKSAKNGSGGIAVLVLDALTRRQWVREEDLAKELKLNTKQ 60

Query: 68  LRRTLRFFEEEKFITRDHRRETAKGAKIYSAAVAANADGQHTGKEGEEKVKLHTHSYCCL 127
           LR  LR+FEE++FI R HR+E +          +A  +G+     GE+KVK+H +SYCCL
Sbjct: 61  LRTILRYFEEQQFIMRVHRKEKS----------SATTNGR-----GEDKVKVHMYSYCCL 105

Query: 128 DYAQIYDVTRYRLHRMKHKLKDELENKNTLQEYICPNCGKRYNALDALRLISFEDEDFHC 187
           DY+QIYDV RY+LHRMK + KD LE+K+ +QEY CPNC ++           F    FHC
Sbjct: 106 DYSQIYDVIRYKLHRMKKEFKDVLEDKDNVQEYGCPNCKRKI----------F----FHC 151

Query: 188 ESCNGKLEVESDKIAAQE 205
           E+CNG+L +E +K+ ++E
Sbjct: 152 ENCNGELVMECNKLTSEE 169